- openSUSE Science

[opensuse-science] openmpi 4
by Alin Marin Elena 23 Jun '20

23 Jun '20

Hi, I see openmpi 4 is nicely in the science and hpc packages but nothing else seems to be built against it. Is there any reason why we do not build against openmpi4? Regards, Alin Without Questions there are no Answers! ______________________________________________________________________ Dr. Alin Marin ELENA http://alin.elena.space/ ______________________________________________________________________ -- To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org

1 0

[opensuse-science] Bumping ROOT version from 5.34/38 (2018) to 6.20/04 (2020)
by Steinhagen, Ralph Dr. 09 Jun '20

09 Jun '20

Hi, I like the fact that the OpenSuse Science repository exists. Lot's of tools that I otherwise would need to regularly recompile by hand. I was wondering whether this is still actively maintained and/or how to ask for bumping a version of a particular package? I am looking in particular for the v6 version of CERN's ROOT package (Tumbleweed) with most of its sub-modules enabled... Any help would be much appreciated! Thanks in advance. Kind regards, Ralph-- To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org

2 1

[opensuse-science] boost
by Alin Marin Elena 06 Jun '20

06 Jun '20

Hi I am looking on tumbleweed at boost rpm -ql boost_1_71_0-gnu-openmpi3-hpc-devel seems to be still on gnu9... when default is gnu10... also any plans on getting openmpi4? Alin Without Questions there are no Answers! ______________________________________________________________________ Dr. Alin Marin ELENA http://alin.elena.space/ ______________________________________________________________________ -- To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org

1 0

[opensuse-science] Disabling/removing SLE11_SP4, SLE12 and SLE15_SP0?
by Stefan Brüns 01 Apr '20

01 Apr '20

Hi everyone, I propose to remove the above three repositories from the science project: SLE11_SP4: - most packages fail or are unresolvable - the remaining packages may be inconsistent, as many dependencies fail to build. SLE12: - builds against Tool:SLE_12, so is a misnomer - SLE12_SP0 is out of maintenance - not in as bad a shape as SLE11_SP4, but still ... SLE15(_SP0): - there are SLE15_SP1 and SLE15_SP2 Kind regards, Stefan -- Stefan Brüns / Bergstraße 21 / 52062 Aachen home: +49 241 53809034 mobile: +49 151 50412019

1 0

Re: [opensuse-science] HPC modules for non-default gcc versions
by Egbert Eich 02 Mar '20

02 Mar '20

Christian Neyers writes: > Hi all, > > we currently have the `gnu-compilers-hpc` package that mirrors the compiler > version of the "default" gcc package, i.e. version 7 currently in 15.0 and > 15.1. The spec file actually defines different flavours, but they are not > enabled in the _multibuild. > > Are there plans to enable them at some point? Or some issues holding it back? for Leap 15 and 15.1 this is actually under way: once the updates to gnu-compilers-hpc for SLE-HPC 15 and SLE-HPC 15 SP1 have gone thru QA and are released, this should show up as a Leap maintenance update automagically. Cheers, Egbert. -- To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org

2 2

Re: [opensuse-science] load boost module
by Egbert Eich 28 Feb '20

28 Feb '20

Yes, indeed :( Darn :(( I will see if I can find a fix quickly. Cheers, Egbert. Alin Marin Elena writes: > Hi Egbert, > > it works exactly as you say, but the openmpi3 version has no headers installed. > > Alin > > Without Questions there are no Answers! > ______________________________________________________________________ > Dr. Alin Marin ELENA > http://alin.elena.space/ > ______________________________________________________________________ > > On Fri, 28 Feb 2020 at 14:22, Egbert Eich <eich(a)suse.com> wrote: > > > > > > > > Hi Alin, > > > > this shouldn't be a problem - the directory is different: > > /usr/share/lmod/moduledeps/gnu-9/boost (serial) > > and > > /usr/share/lmod/moduledeps/gnu-9-openmpi-3/boost (openmpi3) > > > > If you do > > $ module load gnu > > you will get the serial version as > > /usr/share/lmod/moduledeps/gnu-9-openmpi-3 > > is not in the module search path. > > However, if you do > > $ module load gnu openmpi3 > > /usr/share/lmod/moduledeps/gnu-9-openmpi-3 will be prepended > > to the search path and you will get the openmpi3 variant. > > > > Doesn't this work for you? > > > > Cheers, > > Egbert. > > > > Alin Marin Elena writes: > > > Hi Egbert, > > > > > > also since you are at this, it seems modules have the same name for > > > serial and mpi, resulting in bad loading when you have mpi loaded.. > > > seen this with openmpi. > > > > > > Yours, > > > Alin > > > Without Questions there are no Answers! > > > ______________________________________________________________________ > > > Dr. Alin Marin ELENA > > > http://alin.elena.space/ > > > ______________________________________________________________________ > > > > > > On Fri, 28 Feb 2020 at 13:41, Egbert Eich <eich(a)suse.com> wrote: > > > > > > > > > > > > Hi Alin! > > > > > > > > Oops, you're right. The spec file looks wrong. > > > > Lemme fix this. > > > > > > > > Thanks a lot for the report! > > > > > > > > Cheers, > > > > Egbert. > > > > > > > > Alin Marin Elena writes: > > > > > Hi, > > > > > > > > > > I try to load boost module, hpc version with openmpi and i get the error below. > > > > > > > > > > cause is the [0-9] which wants to be escaped \[0-9\] > > > > > > > > > > module load boost > > > > > Lmod has detected the following error: > > > > > /usr/share/lmod/moduledeps/gnu-9-openmpi-3/boost/1.71.0: > > > > > (boost/1.71.0): invalid command name "0-9" > > > > > While processing the following module(s): > > > > > Module fullname Module Filename > > > > > --------------- --------------- > > > > > boost/1.71.0 /usr/share/lmod/moduledeps/gnu-9-openmpi-3/boost/1.71.0 > > > > > > > > > > > > > > > Without Questions there are no Answers! > > > > > ______________________________________________________________________ > > > > > Dr. Alin Marin ELENA > > > > > http://alin.elena.space/ > > > > > ______________________________________________________________________ > > > > > -- > > > > > To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org > > > > > To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org > > > > > > > > -- > > > > Egbert Eich (Res. & Dev.) SUSE Labs - Project Manager HPC > > > > Tel: +49 911-740 53 0 https://www.suse.com > > > > ----------------------------------------------------------------------- > > > > SUSE Software Solutions Germany GmbH, Maxfeldstrasse 5, 90409 Nuernberg > > > > Geschaeftsfuehrer: Felix Imendoerffer > > > > (HRB 36809, AG Nürnberg) > > > > -- > > > > To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org > > > > To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org > > > > > > > > -- > > Egbert Eich (Res. & Dev.) SUSE Labs - Project Manager HPC > > Tel: +49 911-740 53 0 https://www.suse.com > > ----------------------------------------------------------------------- > > SUSE Software Solutions Germany GmbH, Maxfeldstrasse 5, 90409 Nuernberg > > Geschaeftsfuehrer: Felix Imendoerffer > > (HRB 36809, AG Nürnberg) > > -- > > To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org > > To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org > > -- Egbert Eich (Res. & Dev.) SUSE Labs - Project Manager HPC Tel: +49 911-740 53 0 https://www.suse.com ----------------------------------------------------------------------- SUSE Software Solutions Germany GmbH, Maxfeldstrasse 5, 90409 Nuernberg Geschaeftsfuehrer: Felix Imendoerffer (HRB 36809, AG Nürnberg) -- To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org

1 0

Re: [opensuse-science] load boost module
by Egbert Eich 28 Feb '20

28 Feb '20

Hi Alin, this shouldn't be a problem - the directory is different: /usr/share/lmod/moduledeps/gnu-9/boost (serial) and /usr/share/lmod/moduledeps/gnu-9-openmpi-3/boost (openmpi3) If you do $ module load gnu you will get the serial version as /usr/share/lmod/moduledeps/gnu-9-openmpi-3 is not in the module search path. However, if you do $ module load gnu openmpi3 /usr/share/lmod/moduledeps/gnu-9-openmpi-3 will be prepended to the search path and you will get the openmpi3 variant. Doesn't this work for you? Cheers, Egbert. Alin Marin Elena writes: > Hi Egbert, > > also since you are at this, it seems modules have the same name for > serial and mpi, resulting in bad loading when you have mpi loaded.. > seen this with openmpi. > > Yours, > Alin > Without Questions there are no Answers! > ______________________________________________________________________ > Dr. Alin Marin ELENA > http://alin.elena.space/ > ______________________________________________________________________ > > On Fri, 28 Feb 2020 at 13:41, Egbert Eich <eich(a)suse.com> wrote: > > > > > > Hi Alin! > > > > Oops, you're right. The spec file looks wrong. > > Lemme fix this. > > > > Thanks a lot for the report! > > > > Cheers, > > Egbert. > > > > Alin Marin Elena writes: > > > Hi, > > > > > > I try to load boost module, hpc version with openmpi and i get the error below. > > > > > > cause is the [0-9] which wants to be escaped \[0-9\] > > > > > > module load boost > > > Lmod has detected the following error: > > > /usr/share/lmod/moduledeps/gnu-9-openmpi-3/boost/1.71.0: > > > (boost/1.71.0): invalid command name "0-9" > > > While processing the following module(s): > > > Module fullname Module Filename > > > --------------- --------------- > > > boost/1.71.0 /usr/share/lmod/moduledeps/gnu-9-openmpi-3/boost/1.71.0 > > > > > > > > > Without Questions there are no Answers! > > > ______________________________________________________________________ > > > Dr. Alin Marin ELENA > > > http://alin.elena.space/ > > > ______________________________________________________________________ > > > -- > > > To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org > > > To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org > > > > -- > > Egbert Eich (Res. & Dev.) SUSE Labs - Project Manager HPC > > Tel: +49 911-740 53 0 https://www.suse.com > > ----------------------------------------------------------------------- > > SUSE Software Solutions Germany GmbH, Maxfeldstrasse 5, 90409 Nuernberg > > Geschaeftsfuehrer: Felix Imendoerffer > > (HRB 36809, AG Nürnberg) > > -- > > To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org > > To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org > > -- Egbert Eich (Res. & Dev.) SUSE Labs - Project Manager HPC Tel: +49 911-740 53 0 https://www.suse.com ----------------------------------------------------------------------- SUSE Software Solutions Germany GmbH, Maxfeldstrasse 5, 90409 Nuernberg Geschaeftsfuehrer: Felix Imendoerffer (HRB 36809, AG Nürnberg) -- To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org

2 1

Re: [opensuse-science] load boost module
by Egbert Eich 28 Feb '20

28 Feb '20

Hi Alin! Oops, you're right. The spec file looks wrong. Lemme fix this. Thanks a lot for the report! Cheers, Egbert. Alin Marin Elena writes: > Hi, > > I try to load boost module, hpc version with openmpi and i get the error below. > > cause is the [0-9] which wants to be escaped \[0-9\] > > module load boost > Lmod has detected the following error: > /usr/share/lmod/moduledeps/gnu-9-openmpi-3/boost/1.71.0: > (boost/1.71.0): invalid command name "0-9" > While processing the following module(s): > Module fullname Module Filename > --------------- --------------- > boost/1.71.0 /usr/share/lmod/moduledeps/gnu-9-openmpi-3/boost/1.71.0 > > > Without Questions there are no Answers! > ______________________________________________________________________ > Dr. Alin Marin ELENA > http://alin.elena.space/ > ______________________________________________________________________ > -- > To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org > To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org -- Egbert Eich (Res. & Dev.) SUSE Labs - Project Manager HPC Tel: +49 911-740 53 0 https://www.suse.com ----------------------------------------------------------------------- SUSE Software Solutions Germany GmbH, Maxfeldstrasse 5, 90409 Nuernberg Geschaeftsfuehrer: Felix Imendoerffer (HRB 36809, AG Nürnberg) -- To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org

2 1

[opensuse-science] openmpi4
by Alin Marin Elena 28 Feb '20

28 Feb '20

Hi, any plans on adding openmpi4 in science? I expect some failures from older codes using it so may be a good idea. Regards, Alin Without Questions there are no Answers! ______________________________________________________________________ Dr. Alin Marin ELENA http://alin.elena.space/ ______________________________________________________________________ -- To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org

1 0

[opensuse-science] load boost module
by Alin Marin Elena 28 Feb '20

28 Feb '20

Hi, I try to load boost module, hpc version with openmpi and i get the error below. cause is the [0-9] which wants to be escaped \[0-9\] module load boost Lmod has detected the following error: /usr/share/lmod/moduledeps/gnu-9-openmpi-3/boost/1.71.0: (boost/1.71.0): invalid command name "0-9" While processing the following module(s): Module fullname Module Filename --------------- --------------- boost/1.71.0 /usr/share/lmod/moduledeps/gnu-9-openmpi-3/boost/1.71.0 Without Questions there are no Answers! ______________________________________________________________________ Dr. Alin Marin ELENA http://alin.elena.space/ ______________________________________________________________________ -- To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org

1 0