openSUSE Science July 2020

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2 participants
5 discussions

Re: [opensuse-science] openmpi 4
by Egbert Eich 20 Jul '20

20 Jul '20

Hi Alin, sorry, I was extremely busy - even over the weekend. So it took me a while. Alin Marin Elena writes: > Hi, > > I fail miserable for fftw3 > https://build.opensuse.org/package/show/home:ealin:branches:multimedia:libs… > for a reason seems to still use openmpi3... and I do not see the error. > > can anyone have a look and pinpoint the issue please? I've found typo in the spec file which was not at all related to your changes. If you don't mind I will fix this and add your patch to my changes. Thanks for pointing out this issue! Cheers, Egbert. > > > Alin > Without Questions there are no Answers! > ______________________________________________________________________ > Dr. Alin Marin ELENA > http://alin.elena.space/ > ______________________________________________________________________ > > On Tue, 23 Jun 2020 at 19:39, Egbert Eich <eich(a)suse.com> wrote: > > > > > > Hi Alin, > > > > Alin Marin Elena writes: > > > Hi, > > > > > > I see openmpi 4 is nicely in the science and hpc packages but nothing > > > else seems to be built against it. > > > > > > Is there any reason why we do not build against openmpi4? > > > > Well, mostly time, I'd guess - thing with higher priority. > > > > As sonn as I find time, I will do it - unless someone beats > > me to it ;) > > > > Cheers, > > Egbert. > > > > > > > > Regards, > > > Alin > > > > > > Without Questions there are no Answers! > > > ______________________________________________________________________ > > > Dr. Alin Marin ELENA > > > http://alin.elena.space/ > > > ______________________________________________________________________ > > > -- > > > To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org > > > To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org > > > > -- > > Egbert Eich (Res. & Dev.) SUSE Labs - Project Manager HPC > > Tel: +49 911-740 53 0 https://www.suse.com > > ----------------------------------------------------------------------- > > SUSE Software Solutions Germany GmbH, Maxfeldstrasse 5, 90409 Nuernberg > > Geschaeftsfuehrer: Felix Imendoerffer > > (HRB 36809, AG Nürnberg) > > -- > > To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org > > To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org > > > -- > To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org > To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org -- Egbert Eich (Res. & Dev.) SUSE Labs - Project Manager HPC Tel: +49 911-740 53 0 https://www.suse.com ----------------------------------------------------------------------- SUSE Software Solutions Germany GmbH, Maxfeldstrasse 5, 90409 Nuernberg Geschaeftsfuehrer: Felix Imendoerffer (HRB 36809, AG Nürnberg) -- To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org

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Re: [opensuse-science] openmpi 4
by Egbert Eich 16 Jul '20

16 Jul '20

Alin Marin Elena writes: > Hi, > > added openmp4 to scalapack > sr 821233 > > there are some failures due to -fallow-argument-mismatch being applied > to versions of gcc that do not support it. > Thanks! Unfortunately, a changelog entry was missing. I've caught this too late. I've added a note the the changelog together another fix I was going to make. Cheers, Egbert. -- To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org

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Re: [opensuse-science] openmpi 4
by Egbert Eich 16 Jul '20

16 Jul '20

Hi Alin, Alin Marin Elena writes: > Hi, > > I see openmpi 4 is nicely in the science and hpc packages but nothing > else seems to be built against it. > > Is there any reason why we do not build against openmpi4? Well, mostly time, I'd guess - thing with higher priority. As sonn as I find time, I will do it - unless someone beats me to it ;) Cheers, Egbert. > > Regards, > Alin > > Without Questions there are no Answers! > ______________________________________________________________________ > Dr. Alin Marin ELENA > http://alin.elena.space/ > ______________________________________________________________________ > -- > To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org > To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org -- Egbert Eich (Res. & Dev.) SUSE Labs - Project Manager HPC Tel: +49 911-740 53 0 https://www.suse.com ----------------------------------------------------------------------- SUSE Software Solutions Germany GmbH, Maxfeldstrasse 5, 90409 Nuernberg Geschaeftsfuehrer: Felix Imendoerffer (HRB 36809, AG Nürnberg) -- To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org

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Re: [opensuse-science] openmpi 4
by Egbert Eich 16 Jul '20

16 Jul '20

Hi Alin, Alin Marin Elena writes: > got this one rejected... and i fail to see any comment > > https://build.opensuse.org/request/show/816818 > There actually is one: ----------------------------- badshah400 wrote 7 days ago Thanks for the sr. However, this: %if !0%{?is_opensuse} && 0%{?sle_version:1} && 0%{?sle_version} < 150200 && 0%{?suse_version} == 1500 %define DisOMPI4 ExclusiveArch: do_not_build %endif seems to not disable build for Leap, if that is the intention (gauging from the .changes entry). The -openmpi4 builds for Leap are unresolvable rather than excluded. ----------------------------- To fix this, you may want to - remove !0%{?is_opensuse} - change 0%{?sle_version} < 150200 to 150300 ^^^^^^ Sorry, I missed this! Thanks, Cheers, Egbert. > Alin > > Without Questions there are no Answers! > ______________________________________________________________________ > Dr. Alin Marin ELENA > http://alin.elena.space/ > ______________________________________________________________________ > > On Tue, 23 Jun 2020 at 20:08, Egbert Eich <eich(a)suse.com> wrote: > > > > > > Hi! > > > > Alin Marin Elena writes: > > > I can start looking into it if you point me to the dev repos to branch > > > from them. > > > > Thanks for the offer! > > > > Most relevant libraries would be in this project: > > https://build.opensuse.org/project/show/science > > The following packages in there use MPI and are > > 'environment module aware': > > scalapach > > petsc > > hdf5 > > netcdf > > netcdf-fortran > > adios > > mumps > > scotch > > hypre > > trilinos > > > > There are a few packages from other projects: > > > > multimedia:libs fftw3 > > science:HPC mpiP > > science:HPC imb > > > > > > > as far as I remember we shall just add one more option in a config file. > > > > Yes, almost. > > The job is fairly straight forward, not to say boring: > > you'd probably duplicate the openmpi3 setup in the spec file > > and _multibuild file. > > Some spec files may have macros to individually disable openmpi > > versions - you may want to duplicate these for openmpi4 as well, > > probably. > > > > If you want me to review, you may want to start with one and I will look > > it over once you've submitted it. > > > > Thanks! > > > > Cheers, > > Egbert. > > > > > > > > Regards, > > > Alin > > > > > > Without Questions there are no Answers! > > > ______________________________________________________________________ > > > Dr. Alin Marin ELENA > > > http://alin.elena.space/ > > > ______________________________________________________________________ > > > > > > On Tue, 23 Jun 2020 at 19:39, Egbert Eich <eich(a)suse.com> wrote: > > > > > > > > > > > > Hi Alin, > > > > > > > > Alin Marin Elena writes: > > > > > Hi, > > > > > > > > > > I see openmpi 4 is nicely in the science and hpc packages but nothing > > > > > else seems to be built against it. > > > > > > > > > > Is there any reason why we do not build against openmpi4? > > > > > > > > Well, mostly time, I'd guess - thing with higher priority. > > > > > > > > As sonn as I find time, I will do it - unless someone beats > > > > me to it ;) > > > > > > > > Cheers, > > > > Egbert. > > > > > > > > > > > > > > Regards, > > > > > Alin > > > > > > > > > > Without Questions there are no Answers! > > > > > ______________________________________________________________________ > > > > > Dr. Alin Marin ELENA > > > > > http://alin.elena.space/ > > > > > ______________________________________________________________________ > > > > > -- > > > > > To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org > > > > > To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org > > > > > > > > -- > > > > Egbert Eich (Res. & Dev.) SUSE Labs - Project Manager HPC > > > > Tel: +49 911-740 53 0 https://www.suse.com > > > > ----------------------------------------------------------------------- > > > > SUSE Software Solutions Germany GmbH, Maxfeldstrasse 5, 90409 Nuernberg > > > > Geschaeftsfuehrer: Felix Imendoerffer > > > > (HRB 36809, AG Nürnberg) > > > > -- > > > > To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org > > > > To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org > > > > > > > > -- > > Egbert Eich (Res. & Dev.) SUSE Labs - Project Manager HPC > > Tel: +49 911-740 53 0 https://www.suse.com > > ----------------------------------------------------------------------- > > SUSE Software Solutions Germany GmbH, Maxfeldstrasse 5, 90409 Nuernberg > > Geschaeftsfuehrer: Felix Imendoerffer > > (HRB 36809, AG Nürnberg) > > -- > > To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org > > To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org > > -- Egbert Eich (Res. & Dev.) SUSE Labs - Project Manager HPC Tel: +49 911-740 53 0 https://www.suse.com ----------------------------------------------------------------------- SUSE Software Solutions Germany GmbH, Maxfeldstrasse 5, 90409 Nuernberg Geschaeftsfuehrer: Felix Imendoerffer (HRB 36809, AG Nürnberg) -- To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org

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Re: [opensuse-science] openmpi 4
by Egbert Eich 01 Jul '20

01 Jul '20

Hi! Alin Marin Elena writes: > I can start looking into it if you point me to the dev repos to branch > from them. Thanks for the offer! Most relevant libraries would be in this project: https://build.opensuse.org/project/show/science The following packages in there use MPI and are 'environment module aware': scalapach petsc hdf5 netcdf netcdf-fortran adios mumps scotch hypre trilinos There are a few packages from other projects: multimedia:libs fftw3 science:HPC mpiP science:HPC imb > as far as I remember we shall just add one more option in a config file. Yes, almost. The job is fairly straight forward, not to say boring: you'd probably duplicate the openmpi3 setup in the spec file and _multibuild file. Some spec files may have macros to individually disable openmpi versions - you may want to duplicate these for openmpi4 as well, probably. If you want me to review, you may want to start with one and I will look it over once you've submitted it. Thanks! Cheers, Egbert. > > Regards, > Alin > > Without Questions there are no Answers! > ______________________________________________________________________ > Dr. Alin Marin ELENA > http://alin.elena.space/ > ______________________________________________________________________ > > On Tue, 23 Jun 2020 at 19:39, Egbert Eich <eich(a)suse.com> wrote: > > > > > > Hi Alin, > > > > Alin Marin Elena writes: > > > Hi, > > > > > > I see openmpi 4 is nicely in the science and hpc packages but nothing > > > else seems to be built against it. > > > > > > Is there any reason why we do not build against openmpi4? > > > > Well, mostly time, I'd guess - thing with higher priority. > > > > As sonn as I find time, I will do it - unless someone beats > > me to it ;) > > > > Cheers, > > Egbert. > > > > > > > > Regards, > > > Alin > > > > > > Without Questions there are no Answers! > > > ______________________________________________________________________ > > > Dr. Alin Marin ELENA > > > http://alin.elena.space/ > > > ______________________________________________________________________ > > > -- > > > To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org > > > To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org > > > > -- > > Egbert Eich (Res. & Dev.) SUSE Labs - Project Manager HPC > > Tel: +49 911-740 53 0 https://www.suse.com > > ----------------------------------------------------------------------- > > SUSE Software Solutions Germany GmbH, Maxfeldstrasse 5, 90409 Nuernberg > > Geschaeftsfuehrer: Felix Imendoerffer > > (HRB 36809, AG Nürnberg) > > -- > > To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org > > To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org > > -- Egbert Eich (Res. & Dev.) SUSE Labs - Project Manager HPC Tel: +49 911-740 53 0 https://www.suse.com ----------------------------------------------------------------------- SUSE Software Solutions Germany GmbH, Maxfeldstrasse 5, 90409 Nuernberg Geschaeftsfuehrer: Felix Imendoerffer (HRB 36809, AG Nürnberg) -- To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org

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openSUSE Science July 2020