openSUSE Science November 2019

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3 participants
6 discussions

Re: [opensuse-science] HPC modules for non-default gcc versions
by Egbert Eich 02 Mar '20

02 Mar '20

Christian Neyers writes: > Hi all, > > we currently have the `gnu-compilers-hpc` package that mirrors the compiler > version of the "default" gcc package, i.e. version 7 currently in 15.0 and > 15.1. The spec file actually defines different flavours, but they are not > enabled in the _multibuild. > > Are there plans to enable them at some point? Or some issues holding it back? for Leap 15 and 15.1 this is actually under way: once the updates to gnu-compilers-hpc for SLE-HPC 15 and SLE-HPC 15 SP1 have gone thru QA and are released, this should show up as a Leap maintenance update automagically. Cheers, Egbert. -- To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org

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Re: [opensuse-science] gsl
by Egbert Eich 17 Nov '19

17 Nov '19

Alin Marin Elena writes: > thank you Christian, seems to be solved now. > one other thing I noticed is the fact the so number is 25 but the library is 2.6 Looks like an omission with the last package update. Thanks for reporting! Cheers, Egbert. > > Alin > > Without Questions there are no Answers! > ______________________________________________________________________ > Dr. Alin Marin ELENA > http://alin.elena.space/ > ______________________________________________________________________ > > On Fri, 15 Nov 2019 at 09:56, Christian Goll <CGoll(a)suse.de> wrote: > > > > On 14.11.19 17:28, Christian Goll wrote: > > > > > > > > > On 14.11.19 16:35, Alin Marin Elena wrote: > > >> Hi, > > >> > > >> here is what I have > > >> > > >> Loading repository data... > > >> Reading installed packages... > > >> > > >> S | Name | Type | Version | Arch | > > >> Repository > > >> ---+-------------------------+---------+----------+--------+------------------------------------------------------------ > > >> > > >> i+ | gsl-gnu-hpc-devel | package | 2.6-30.7 | noarch | Software > > >> for Scientists and Engineers (openSUSE_Tumbleweed) > > >> i+ | gsl_2_6-gnu-hpc-devel | package | 2.6-30.7 | x86_64 | Software > > >> for Scientists and Engineers (openSUSE_Tumbleweed) > > >> i+ | gsl_2_6-gnu-hpc-module | package | 2.6-30.7 | noarch | Software > > >> for Scientists and Engineers (openSUSE_Tumbleweed) > > >> i+ | libgsl25 | package | 2.6-30.6 | x86_64 | Software > > >> for Scientists and Engineers (openSUSE_Tumbleweed) > > >> i+ | libgsl_2_6-gnu-hpc | package | 2.6-30.7 | x86_64 | Software > > >> for Scientists and Engineers (openSUSE_Tumbleweed) > > >> i+ | libgslcblas0 | package | 2.6-30.6 | x86_64 | Software > > >> for Scientists and Engineers (openSUSE_Tumbleweed) > > >> i+ | libgslcblas_2_6-gnu-hpc | package | 2.6-30.7 | x86_64 | Software > > >> for Scientists and Engineers (openSUSE_Tumbleweed) > > >> > > >> with repo > > >> 23 | science | Software for Scientists and > > >> Engineers (openSUSE_Tumbleweed) | Yes | > > >> (r ) > > >> Yes | Yes | 99 | rpm-md | > > >> http://download.opensuse.org/repositories/science/openSUSE_Tumbleweed/ > > >> | > > >> > > > > > > In the science project %hpc_libdir is expanded to > > > /usr/lib/hpc/gnu9/gsl/2.6/lib > > > where in Factory it is > > > /usr/lib/hpc/gnu9/gsl/2.6/lib64 > > > I will investigate this further. > > > > > > kind regards, > > > Christian > > > > > The problem here is the expansion of %hpc_libdir which is expanded > > either to: > > * /usr/lib/hpc/gnu9/gsl/2.6/lib, if the rpm is built remotely in the > > open build service, where the module rpm is taken from the 32bit built > > * /usr/lib/hpc/gnu9/gsl/2.6/lib64, if the rpm is built locally with osc > > build , where the module rpm is taken from the 64bit built. > > The fix is to move the module rpm from noarch to x86_64. I will do that. > > > > kind regards, > > Christian > > > > > > > > -- > > Christian Goll > > CGoll(a)suse.de > > > > SUSE Software Solutions Germany GmbH > > Maxfeldstr. 5 > > 90409 Nürnberg > > Germany > > > > (HRB 36809, AG Nürnberg) > > > > Geschäftsführer: Felix Imendörffer > > -- > > To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org > > To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org > > > -- > To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org > To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org -- Egbert Eich (Res. & Dev.) SUSE LINUX GmbH SUSE Labs - Project Manager HPC Tel: +49 911-740 53 0 http://www.suse.com ----------------------------------------------------------------- SUSE Software Solutions Germany GmbH, Maxfeldstrasse 5, 90409 Nuernberg Geschaeftsfuehrer: Felix Imendoerffer HRB 247165 (AG Muenchen) -- To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org

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Re: [opensuse-science] boost and openmpi3
by Egbert Eich 17 Nov '19

17 Nov '19

Should be easy to add. This has just not been on the radar. Cheers, Egbert. Alin Marin Elena writes: > Any reason why openmpi3 is not available with boots? > > Alin > > Without Questions there are no Answers! > ______________________________________________________________________ > Dr. Alin Marin ELENA > http://alin.elena.space/ > ______________________________________________________________________ > -- > To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org > To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org -- Egbert Eich (Res. & Dev.) SUSE LINUX GmbH SUSE Labs - Project Manager HPC Tel: +49 911-740 53 0 http://www.suse.com ----------------------------------------------------------------- SUSE Software Solutions Germany GmbH, Maxfeldstrasse 5, 90409 Nuernberg Geschaeftsfuehrer: Felix Imendoerffer HRB 247165 (AG Muenchen) -- To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org

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[opensuse-science] boost and openmpi3
by Alin Marin Elena 16 Nov '19

16 Nov '19

Any reason why openmpi3 is not available with boots? Alin Without Questions there are no Answers! ______________________________________________________________________ Dr. Alin Marin ELENA http://alin.elena.space/ ______________________________________________________________________ -- To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org

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[opensuse-science] valgrind enable mpi
by Alin Marin Elena 16 Nov '19

16 Nov '19

Hi, would be nice to have a valgrind with mpi enabled... various flavours. Regards, Alin Without Questions there are no Answers! ______________________________________________________________________ Dr. Alin Marin ELENA http://alin.elena.space/ ______________________________________________________________________ -- To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org

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[opensuse-science] gsl
by Alin Marin Elena 16 Nov '19

16 Nov '19

Hi, recently I have installed on tumbleweed gsl 2.6. the module associated with it seems to be wrong , LD_LIBRARY_PATH is not correct shall be /usr/lib/hpc/gnu9/gsl/2.6/lib64/ and of course other that use the same path. =========================== whatis("Name: gsl built with gnu toolchain ") whatis("Version: 2.6 ") whatis("Category: runtime library ") whatis("Description: GNU Scientific Library ") whatis("https://www.gnu.org/software/gsl/ ") prepend_path("PATH","/usr/lib/hpc/gnu9/gsl/2.6/bin") prepend_path("LD_LIBRARY_PATH","/usr/lib/hpc/gnu9/gsl/2.6/lib") setenv("GSL_DIR","/usr/lib/hpc/gnu9/gsl/2.6") setenv("GSL_BIN","/usr/lib/hpc/gnu9/gsl/2.6/bin") setenv("GSL_LIB","/usr/lib/hpc/gnu9/gsl/2.6/lib") prepend_path("LIBRARY_PATH","/usr/lib/hpc/gnu9/gsl/2.6/lib") prepend_path("MANPATH","/usr/lib/hpc/gnu9/gsl/2.6/share/man") prepend_path("INFOPATH","/usr/lib/hpc/gnu9/gsl/2.6/share/info") prepend_path("CPATH","/usr/lib/hpc/gnu9/gsl/2.6/include") prepend_path("C_INCLUDE_PATH","/usr/lib/hpc/gnu9/gsl/2.6/include") prepend_path("CPLUS_INCLUDE_PATH","/usr/lib/hpc/gnu9/gsl/2.6/include") prepend_path("INCLUDE","/usr/lib/hpc/gnu9/gsl/2.6/include") prepend_path("PKG_CONFIG_PATH","/usr/lib/hpc/gnu9/gsl/2.6/lib/pkgconfig") setenv("GSL_INC","/usr/lib/hpc/gnu9/gsl/2.6/include") family("gsl") help([[ This module loads the gsl library built with the gnu compiler toolchain. Version 2.6 ]]) ============= Without Questions there are no Answers! ______________________________________________________________________ Dr. Alin Marin ELENA http://alin.elena.space/ ______________________________________________________________________ -- To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org

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openSUSE Science November 2019