August 2018 - openSUSE Science - openSUSE Mailing Lists

Re: [opensuse-science] openblas flavours
by Egbert Eich 09 Aug '18

09 Aug '18

Alin Marin Elena writes: > can we have openmp and serial openblas hpc flavours? There are two flavors of openblas: gnu-hpc and gnu-hpc-pthreads. You can get the serial version behavior with the latter by specifying OMP_NUM_THREADS=1 - see also README.HPC.SUSE in the packages doc directory. > also scalapack will need to be able to use any of them. It should - by setting the environment so that the correct version is found. Is there anything missing? Cheers, Egbert. > > Alin > > > Without Questions there are no Answers! > ______________________________________________________________________ > Dr. Alin Marin ELENA > http://alin.elena.space/ > ______________________________________________________________________ > -- > To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org > To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org > -- Egbert Eich (Res. & Dev.) SUSE LINUX GmbH SUSE Labs - Project Manager HPC Tel: +49 911-740 53 0 http://www.suse.com ----------------------------------------------------------------- SUSE Linux GmbH, GF: Felix Imendörffer, Jane Smithard, Graham Norton, HRB 21284 (AG Nürnberg) Maxfeldstraße 5, D90409 Nürnberg, Germany-- To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org

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[opensuse-science] openblas flavours
by Alin Marin Elena 08 Aug '18

08 Aug '18

can we have openmp and serial openblas hpc flavours? also scalapack will need to be able to use any of them. Alin Without Questions there are no Answers! ______________________________________________________________________ Dr. Alin Marin ELENA http://alin.elena.space/ ______________________________________________________________________ -- To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org

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Re: [opensuse-science] strange segfault with openmpi 3.1.1
by Egbert Eich 08 Aug '18

08 Aug '18

Hi Alin! Alin Marin Elena writes: > No problem. I was not sure if you will get it as a bug here or > upstream hence the ML first. > > does not require any args > > just > > mpirun -n 2 ./a.x > > I will add it to the bug too Thanks a lot :) We should be able to reproduce it now. Cheers, Egbert. -- To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org

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Re: [opensuse-science] strange segfault with openmpi 3.1.1
by Egbert Eich 08 Aug '18

08 Aug '18

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Re: [opensuse-science] cmake
by Egbert Eich 08 Aug '18

08 Aug '18

Alin Marin Elena writes: > can we add cmake in development pattern for hpc? @Christian, could you look into this please? Thanks! Cheers, Egbert. > > > Regards, > Alin > > Without Questions there are no Answers! > ______________________________________________________________________ > Dr. Alin Marin ELENA > http://alin.elena.space/ > ______________________________________________________________________ > -- > To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org > To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org > -- Egbert Eich (Res. & Dev.) SUSE LINUX GmbH SUSE Labs - Project Manager HPC Tel: +49 911-740 53 0 http://www.suse.com ----------------------------------------------------------------- SUSE Linux GmbH, GF: Felix Imendörffer, Jane Smithard, Graham Norton, HRB 21284 (AG Nürnberg) Maxfeldstraße 5, D90409 Nürnberg, Germany-- To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org

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[opensuse-science] strange segfault with openmpi 3.1.1
by Alin Marin Elena 07 Aug '18

07 Aug '18

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[opensuse-science] cmake
by Alin Marin Elena 07 Aug '18

07 Aug '18

can we add cmake in development pattern for hpc? Regards, Alin Without Questions there are no Answers! ______________________________________________________________________ Dr. Alin Marin ELENA http://alin.elena.space/ ______________________________________________________________________ -- To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org

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Re: [opensuse-science] openmpi 3.1.1
by Egbert Eich 06 Aug '18

06 Aug '18

Alin Marin Elena writes: > Thank you Nicolas! now is in tumbleweed I see. > > it misses from leap 15.0 with science repo. do I miss anything. It is in: https://download.opensuse.org/repositories/science:/HPC/openSUSE_Leap_15/x8… You may need to do a 'zypper refresh' before looking for the packages. Cheers, Egbert. > > Regards, > Alin > Without Questions there are no Answers! > ______________________________________________________________________ > Dr. Alin Marin ELENA > http://alin.elena.space/ > ______________________________________________________________________ > > > On 31 July 2018 at 08:00, Nicolas Morey-Chaisemartin > <nmoreychaisemartin(a)suse.de> wrote: > > Hi, > > > > It has been updated in science:HPC and should be updated during the week in Factory/TW. > > Just a quick nite: it seems there is an issue with the testsuite on ppc64. The rest looks OK. > > > > Nicolas > > > > On 07/26/2018 12:29 AM, Alin Marin Elena wrote: > >> is it possible to update openmpi 3.0.0 to 3.1.1 > >> or point me in the right direction to create a mr. I am lost now which > >> is the right one to sr to. > >> > >> Alin > >> > >> > >> > >> Without Questions there are no Answers! > >> ______________________________________________________________________ > >> Dr. Alin Marin ELENA > >> http://alin.elena.space/ > >> ______________________________________________________________________ > > > > > -- > To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org > To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org > -- Egbert Eich (Res. & Dev.) SUSE LINUX GmbH SUSE Labs - Project Manager HPC Tel: +49 911-740 53 0 http://www.suse.com ----------------------------------------------------------------- SUSE Linux GmbH, GF: Felix Imendörffer, Jane Smithard, Graham Norton, HRB 21284 (AG Nürnberg) Maxfeldstraße 5, D90409 Nürnberg, Germany-- To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org

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[opensuse-science] openmpi 3.1.1
by Alin Marin Elena 06 Aug '18

06 Aug '18

is it possible to update openmpi 3.0.0 to 3.1.1 or point me in the right direction to create a mr. I am lost now which is the right one to sr to. Alin Without Questions there are no Answers! ______________________________________________________________________ Dr. Alin Marin ELENA http://alin.elena.space/ ______________________________________________________________________ -- To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org

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[opensuse-science] Another cleanup round for science
by Stefan Brüns 04 Aug '18

04 Aug '18

Hi, the following packages are disabled for all projects. I have checked all packages, and I can see no reason to keep any of these: - Freefem++-cs - huge amalgation of other projects, no upstream available, unchanged for 5 years - boost - link to devel:libraries:c_c++ / boost, version boost 1.61 - python-blosc - broken link to devel:languages:python, lives in dlp:numeric now, also in Factory - cfitsio_openSUSE131 - there is science/cfitsio - checkstyle - Java source code checker (version 4.3). Upstream is 8.11, 2018-06-30. - cobertura - Java code coverage checher (version 1.9, 2007). Upstream 2.1.1, 2015. (both checkstyle and cobertura are required by scilab's %check, which has been disabled since 2014) - gluegen2 - links to Java:packages/gluegen2 - gnuradio - links to hardware:sdr/gnuradio - jogl2 - links to Java:packages / jogl2 - jhdf5 - version 2.6.1 from 2010, current is version 3.3.2, respectively included in hdf5-1.10 sources - labplot - obsoleted by science/labplot-kf5 - libdevil - aggregate from games / libdevil - modglue - links to devel:libraries:c_c++ / modglue - octave-forge - amalgation of many forge packages, not updated for 4 years, obsoleted by individual octave-forge-<foo> packages - pangox-compat - copy, developed in GNOME:Factory, also in Factory - protobuf - links to devel:tools:building / protobuf - shogun - version 2.0.0 from 2012, upstream is 6.1.3 from Dec. 2017. - tbb - links to openSUSE:Leap:42.2:Update / tbb - utf8proc - inks to M17N / utf8proc If nobody speaks up, I will delete this next Monday evening (2018-08-06). Kind regards, Stefan -- Stefan Brüns / Bergstraße 21 / 52062 Aachen home: +49 241 53809034 mobile: +49 151 50412019

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