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commit R-base for openSUSE:Factory
Hello community,

here is the log from the commit of package R-base for openSUSE:Factory checked
in at 2019-04-26 22:54:57
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Comparing /work/SRC/openSUSE:Factory/R-base (Old)
and /work/SRC/openSUSE:Factory/.R-base.new.5536 (New)
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++

Package is "R-base"

Fri Apr 26 22:54:57 2019 rev:66 rq:698133 version:unknown

Changes:
--------
--- /work/SRC/openSUSE:Factory/R-base/R-base.changes 2019-03-11
13:51:52.165248130 +0100
+++ /work/SRC/openSUSE:Factory/.R-base.new.5536/R-base.changes 2019-04-26
22:55:00.633293468 +0200
@@ -1,0 +2,759 @@
+Fri Apr 26 09:17:02 UTC 2019 - Detlef Steuer <detlef.steuer@xxxxxx>
+
+- CHANGES IN R 3.6.0:
+
+ SIGNIFICANT USER-VISIBLE CHANGES:
+
+ * Serialization format version 3 becomes the default for
+ serialization and saving of the workspace (save(), serialize(),
+ saveRDS(), compiler::cmpfile()). Serialized data in format 3
+ cannot be read by versions of R prior to version 3.5.0.
+ Serialization format version 2 is still supported and can be
+ selected by version = 2 in the save/serialization functions. The
+ default can be changed back for the whole R session by setting
+ environment variables R_DEFAULT_SAVE_VERSION and
+ R_DEFAULT_SERIALIZE_VERSION to 2. For maximal
+ back-compatibility, files vignette.rds and partial.rdb generated
+ by R CMD build are in serialization format version 2, and resave
+ by default produces files in serialization format version 2
+ (unless the original is already in format version 3).
+
+ * The default method for generating from a discrete uniform
+ distribution (used in sample(), for instance) has been changed.
+ This addresses the fact, pointed out by Ottoboni and Stark, that
+ the previous method made sample() noticeably non-uniform on large
+ populations. See PR#17494 for a discussion. The previous method
+ can be requested using RNGkind() or RNGversion() if necessary for
+ reproduction of old results. Thanks to Duncan Murdoch for
+ contributing the patch and Gabe Becker for further assistance.
+
+ The output of RNGkind() has been changed to also return the
+ 'kind' used by sample().
+
+ NEW FEATURES:
+
+ * Sys.setFileTime() has been vectorized so arguments path and time
+ of length greater than one are now supported.
+
+ * axis() gets new option gap.axis = NA for specifying a
+ multiplication factor for the minimal "gap" (distance) between
+ axis labels drawn. Its default is 1 for labels _parallel_ to the
+ axis, and 0.25 for perpendicular ones.
+
+ Perpendicular labels no longer overlap, fixing bug PR#17384.
+
+ * The default method of plot() gains new arguments xgap.axis = NA
+ and ygap.axis = NA to be passed to the x- and y- axis(..,
+ gap.axis=*) calls.
+
+ * removeSource() now works not only for functions but also for some
+ language objects.
+
+ * as.call(), rep.int(), rep_len() and nchar() dispatch internally.
+
+ * is(object, class2) looks for class2 in the calling namespace
+ after looking in the namespace of class(object).
+ * extendrange(.., f) with a length-2 f now extends separately to
+ the left and the right.
+
+ * lengths() dispatches internally to S4 methods.
+
+ * download.file() on Windows now uses URLdecode() to determine the
+ file extension, and uses binary transfer (mode = "wb") also for
+ file extension .rds.
+
+ The help page for download.file() now contains the same
+ information on all platforms.
+
+ * Setting C locale for collation _via_ environment variables LC_ALL
+ and LC_COLLATE and _via_ a call to Sys.setlocale() now takes
+ precedence over environment variable R_ICU_LOCALE.
+
+ * There is a new function, nullfile(), to give the file name of the
+ null system device (e.g., /dev/null) on the current platform.
+
+ * There are two new options, keep.parse.data and
+ keep.parse.data.pkgs, which control whether parse data are
+ included into sources when keep.source or keep.source.pkgs is
+ TRUE. By default, keep.parse.data.pkgs is now FALSE, which
+ changes previous behavior and significantly reduces space and
+ time overhead when sources are kept when installing packages.
+
+ * In rapply(x, ..), x can also be "list-like" and of length >=
+ 2^{31}.
+
+ * trimws() gets new optional whitespace argument, allowing more
+ extensive definitions of "space", such as including Unicode
+ spaces (as wished in PR#17431).
+
+ * weighted.mean() no longer coerces the weights to a double/numeric
+ vector, since sum() now handles integer overflow. This makes
+ weighted.mean() more polymorphic and endomorphic, but be aware
+ that the results are no longer guaranteed to be a vector of type
+ double.
+
+ * When loading namespaces, S3 method registrations which overwrite
+ previous registrations are now noted by default (using
+ packageStartupMessage()).
+
+ * compiler::cmpfile() gains a version argument, for use when the
+ output file should be saved in serialization format 2.
+
+ * The axis labeling in the default method of pairs() may now be
+ toggled by new options horOdd and verOdd.
+
+ * (Not Windows nor macOS.) Package tcltk now supports an
+ environment variable R_DONT_USE_TK which if set disables Tk
+ initialization. This is intended for use to circumvent errors in
+ loading the package, e.g. with recent Linux running under an
+ address sanitizer.
+
+
+ * The numeric method of all.equal() gets optional arguments countEQ
+ and formatFUN. If countEQ is true, the mean error is more
+ sensible when many entries are *eq*ual.
+
+ * outer(x,y, FUN = "*") is more efficient using tcrossprod(u,v)
+ instead of u %*% t(v).
+
+ * vcov(<mlm>) is more efficient via new optional arguments in
+ summary.mlm().
+
+ * The default method of summary() gets an option to choose the
+ _kind_ of quantile()s to use; wish of PR#17438.
+
+ * Fitting multiple linear models _via_ lm() does work with _matrix_
+ offsets, as suggested in PR#17407.
+
+ * The new functions mem.maxVSize() and mem.maxMSize() allow the
+ maximal size of the vector heap and the maximal number of nodes
+ allowed in the current R process to be queried and set.
+
+ * news() gains support for NEWS.md files.
+
+ * An effort has been started to have our reference manuals, i.e.,
+ all help pages. show platform-independent information (rather
+ than Windows or Unix-alike specifics visible only on that
+ platform). Consequently, the Windows version of X11() / x11()
+ got identical formal arguments to the Unix one.
+
+ * sessionInfo()$running has been factored out in a new variable
+ osVersion.
+
+ * slice.index() now also works for multi-dimensional margins.
+
+ * untar() used with an external tar command assumes this supports
+ decompression including xz and automagically detecting the
+ compression type. This has been true of all mainstream
+ implementations since 2009 (for GNU tar, since version 1.22):
+ older implementations are still supported _via_ the new argument
+ support_old_tars whose default is controlled by environment
+ variable R_SUPPORT_OLD_TARS. (It looks like NetBSD and OpenBSD
+ have 'older' tar commands for this purpose.)
+
+ * The new function asplit() allow splitting an array or matrix by
+ its margins.
+
+ * New functions errorCondition() and warningCondition() provide a
+ convenient way to create structured error and warning objects.
+
+ .Deprecated() now signals a warning of class "deprecatedWarning",
+ and .Defunct() now signals an error of class "defunctError".
+
+ * Many 'package not found' errors are now signaled as errors of
+ class "packageNotFoundError".
+
+ * As an experimental feature, when loadNamespace() fails because
+ the requested package is not available the error is initially
+ signaled with a retry_loadNamespace restart available. This
+ allows a calling handler to try to install the package and
+ continue.
+
+ * S3method() directives in NAMESPACE can now also be used to
+ perform _delayed_ S3 method registration.
+
+ * Experimentally, setting environment variable
+ _R_CHECK_LENGTH_1_LOGIC2_ will lead to warnings (or errors if the
+ variable is set to a 'true' value) when && or || encounter and
+ use arguments of length more than one.
+
+ * Added "lines" and "chars" coordinate systems to grconvertX() and
+ grconvertY().
+
+ * getOption() is more efficient notably for the rare case when
+ called with two arguments, from several contributors in PR#17394.
+
+ * In .col(dim) and .row(dim), dim now may also be an integer-valued
+ "double".
+
+ * sQuote() and dQuote() get an explicit q argument with obvious
+ default instead of using getOption("fancyQuotes") implicitly and
+ unconditionally.
+
+ * unzip() can list archives with comments and with spaces in file
+ names even using an external unzip command.
+
+ * Command line completion has a new setting rc.settings(dots =
+ FALSE) to remove ... from the list of possible function
++++ 562 more lines (skipped)
++++ between /work/SRC/openSUSE:Factory/R-base/R-base.changes
++++ and /work/SRC/openSUSE:Factory/.R-base.new.5536/R-base.changes

Old:
----
R-3.5.3.tar.bz2

New:
----
R-3.6.0.tar.bz2

++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++

Other differences:
------------------
++++++ R-base.spec ++++++
--- /var/tmp/diff_new_pack.lQ9pQ0/_old 2019-04-26 22:55:01.585292854 +0200
+++ /var/tmp/diff_new_pack.lQ9pQ0/_new 2019-04-26 22:55:01.585292854 +0200
@@ -25,7 +25,7 @@
%define release 1

Name: R-base
-Version: 3.5.3
+Version: 3.6.0
Release: %release
%define Rversion %{version}
Source0: R-%{version}.tar.bz2
@@ -1098,7 +1098,7 @@
%package -n R-boot
Summary: Package provides recommended R-boot
Group: Development/Libraries/Other
-Version: 1.3.20
+Version: 1.3.22
Release: %release
Requires: R-base

@@ -1162,7 +1162,7 @@
%package -n R-cluster
Summary: Package provides recommended R-cluster
Group: Development/Libraries/Other
-Version: 2.0.7
+Version: 2.0.8
Release: %release
Requires: R-base

@@ -1342,7 +1342,7 @@
%package -n R-Matrix
Summary: Package provides recommended R-Matrix
Group: Development/Libraries/Other
-Version: 1.2.15
+Version: 1.2.17
Release: %release
Requires: R-base

@@ -1381,7 +1381,7 @@
%package -n R-Matrix-devel
Summary: Package provides header files for recommended R-Matrix
Group: Development/Libraries/Other
-Version: 1.2.15
+Version: 1.2.17
Release: %release
Requires: R-Matrix
Requires: R-base
@@ -1400,7 +1400,7 @@
%package -n R-mgcv
Summary: Package provides recommended R-mgcv
Group: Development/Libraries/Other
-Version: 1.8.27
+Version: 1.8.28
Release: %release
Requires: R-base

@@ -1431,7 +1431,7 @@
%package -n R-nlme
Summary: Package provides recommended R-nlme
Group: Development/Libraries/Other
-Version: 3.1.137
+Version: 3.1.139
Release: %release
Requires: R-base

@@ -1496,7 +1496,7 @@
%package -n R-rpart
Summary: Package provides recommended R-rpart
Group: Development/Libraries/Other
-Version: 4.1.13
+Version: 4.1.15
Release: %release
Requires: R-base

@@ -1562,7 +1562,7 @@
%package -n R-survival
Summary: Package provides recommended R-survival
Group: Development/Libraries/Other
-Version: 2.43.3
+Version: 2.44.1
Release: %release
Requires: R-base


++++++ R-3.5.3.tar.bz2 -> R-3.6.0.tar.bz2 ++++++
/work/SRC/openSUSE:Factory/R-base/R-3.5.3.tar.bz2
/work/SRC/openSUSE:Factory/.R-base.new.5536/R-3.6.0.tar.bz2 differ: char 11,
line 1


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