Script 'mail_helper' called by obssrc Hello community, here is the log from the commit of package bowtie2 for openSUSE:Factory checked in at 2024-08-13 13:23:32 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Comparing /work/SRC/openSUSE:Factory/bowtie2 (Old) and /work/SRC/openSUSE:Factory/.bowtie2.new.7232 (New) ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Package is "bowtie2" Tue Aug 13 13:23:32 2024 rev:13 rq:1193246 version:2.5.4 Changes: -------- --- /work/SRC/openSUSE:Factory/bowtie2/bowtie2.changes 2024-02-26 19:47:36.558720742 +0100 +++ /work/SRC/openSUSE:Factory/.bowtie2.new.7232/bowtie2.changes 2024-08-13 13:23:49.635704447 +0200 @@ -1,0 +2,18 @@ +Wed Aug 7 06:09:40 UTC 2024 - Atri Bhattacharya <badshah400@gmail.com> + +- Update to version 2.5.4: + * Added --sam-opt-config command line option for toggling SAM + Opt flags. + * Fixed an issue causing bowtie2’s memory usage to increase over + time when aligning BAM files. + * Changed bowtie2 to continue flushing output in the event of a + partial write. + * Changed the behavior of bowtie2-build to throw an exception if + it is unable to write the BWT (.1.bt2, .1.rev.bt2). In prior + versions bowtie2-build, would silently ignore the error which + has led some to report the absence of the BWT files in a + “completed” index build. + * Reverted the changes made in v2.5.0 that sometimes caused + unique concordant alignments to be overcounted. + +------------------------------------------------------------------- Old: ---- bowtie2-2.5.3.tar.gz New: ---- bowtie2-2.5.4.tar.gz ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Other differences: ------------------ ++++++ bowtie2.spec ++++++ --- /var/tmp/diff_new_pack.O3G33y/_old 2024-08-13 13:23:50.735750281 +0200 +++ /var/tmp/diff_new_pack.O3G33y/_new 2024-08-13 13:23:50.739750448 +0200 @@ -20,7 +20,7 @@ %ifarch aarch64 %endif Name: bowtie2 -Version: 2.5.3 +Version: 2.5.4 Release: 0 Summary: Fast and memory-efficient short read aligner License: GPL-3.0-only ++++++ bowtie2-2.5.3.tar.gz -> bowtie2-2.5.4.tar.gz ++++++ /work/SRC/openSUSE:Factory/bowtie2/bowtie2-2.5.3.tar.gz /work/SRC/openSUSE:Factory/.bowtie2.new.7232/bowtie2-2.5.4.tar.gz differ: char 13, line 1