[opensuse-factory] Zypper dup hangs during the kernel upgrade in Tumbleweed

5 May 2019

      With the last kernel upgrades in Tumbleweed, zypper dup hangs at this time:
Here is the konsole text with zypper dup:

(214/298) Instalando: cal10n-0.7.7-4.3.noarch
.........................................................................................................................................................[terminado]
(215/298) Instalando: apache-commons-codec-1.11-2.1.noarch
............................................................................................................................................[terminado]
(216/298) Instalando: apache-commons-cli-1.4-3.1.noarch
...............................................................................................................................................[terminado]
(217/298) Instalando: jansi-1.17.1-2.1.noarch
.........................................................................................................................................................[terminado]
(218/298) Instalando: avalon-framework-4.3-2.1.noarch
.................................................................................................................................................[terminado]
(219/298) Instalando: sisu-inject-0.3.3-1.1.noarch
....................................................................................................................................................[terminado]
(220/298) Instalando: plexus-archiver-3.6.0-1.1.noarch
................................................................................................................................................[terminado]
(221/298) Instalando: showfoto-6.1.0-2.1.x86_64
.......................................................................................................................................................[terminado]
(222/298) Instalando: libgstgl-1_0-0-1.14.4-2.1.x86_64
................................................................................................................................................[terminado]
(223/298) Instalando: xmlunit-1.5-9.2.noarch
..........................................................................................................................................................[terminado]
(224/298) Instalando: xmlgraphics-batik-1.10-1.1.noarch
...............................................................................................................................................[terminado]
(225/298) Instalando: log4j-1.2.17-6.1.noarch
.........................................................................................................................................................[terminado]
(226/298) Instalando: ant-1.10.5-8.1.noarch
...........................................................................................................................................................[terminado]
(227/298) Instalando: kernel-default-5.0.10-1.2.x86_64
..................................................................................................................................................<100%>[-]

Here is the output of ps -aux:

root     17311  0.0  0.0  13436 10780 pts/0    S+   01:28   0:00
/usr/bin/perl /usr/lib/bootloader/bootloader_entry add default
5.0.10-1-default vmlinuz-5.0.10-1-default initrd-5.0.10-1-default
root     17312  0.0  0.0   6496  3008 pts/0    S+   01:28   0:00
/bin/bash /usr/lib/bootloader/grub2/config
root     17313  0.0  0.0   6496  2412 pts/0    S+   01:28   0:00
/bin/bash /usr/lib/bootloader/grub2/config
root     17314  0.0  0.0   6760  3536 pts/0    S+   01:28   0:00
/bin/sh /usr/sbin/grub2-mkconfig -o /boot/grub2/grub.cfg
root     17315  0.0  0.0      0     0 ?        I    may04   0:01
[kworker/u16:1-btrfs-worker]
root     17877  0.0  0.0      0     0 ?        I    01:28   0:00
[kworker/7:1-events]
root     18337  0.0  0.0   6628  3416 pts/0    S+   01:28   0:00
/bin/sh /etc/grub.d/30_os-prober
root     18343  0.0  0.0   6628  1868 pts/0    S+   01:28   0:00
/bin/sh /etc/grub.d/30_os-prober
root     18344  0.0  0.0   6760  3532 pts/0    S+   01:28   0:00
/bin/sh /usr/bin/os-prober
root     18345  0.0  0.0   4912   768 pts/0    S+   01:28   0:00 tr   ^
root     18346  0.0  0.0   4888   836 pts/0    S+   01:28   0:00 paste -s -d
root     18434  0.0  0.0   6760  3488 pts/0    S+   01:28   0:00
/bin/sh /usr/lib/os-probes/50mounted-tests btrfs
094b91de-4bab-4425-9743-f23b31971525 /dev/sda1
root     18437  0.0  0.0   6632  1212 pts/0    D+   01:28   0:00 mount
-t btrfs -U 094b91de-4bab-4425-9743-f23b31971525
/tmp/os-probes-50mounted-tests.TM6R7R
jerbes   18458  1.7  0.6 1269460 109304 ?      Rl   01:29   0:02
/usr/bin/konsole
jerbes   18475  0.0  0.0   9460  6200 pts/3    Ss   01:29   0:00 /bin/bash
jerbes   18614  0.0  0.0   9624  3524 pts/3    R+   01:32   0:00 ps -aux
root     20858  0.0  0.0      0     0 ?        I    00:51   0:00
[kworker/3:0-events]
root     20912  0.0  0.0      0     0 ?        I    00:52   0:00
[kworker/6:1-events]
postfix  21050  0.0  0.0  15700  8184 ?        S    00:56   0:00
pickup -l -t fifo -u
root     25541  0.0  0.0      0     0 ?        I    01:17   0:00
[kworker/u16:0-btrfs-endio-write]
root     25542  0.0  0.0      0     0 ?        I    01:17   0:00
[kworker/u16:2-btrfs-worker]
root     25571  0.0  0.0      0     0 ?        I    01:18   0:00
[kworker/7:2-events]
root     25680  0.0  0.0      0     0 ?        I    01:21   0:00
[kworker/5:0-events]
root     25681  0.0  0.0      0     0 ?        I    01:21   0:00
[kworker/4:2-events]
root     25683  0.0  0.0      0     0 ?        I    01:21   0:00
[kworker/0:1-events_freezable_power_]
root     25688  0.0  0.0      0     0 ?        I    01:21   0:00
[kworker/2:0-events]
jerbes   26136  0.0  0.0  66272  5248 ?        S    01:24   0:00
/usr/lib64/libexec/kf5/kdesud
root     26192  0.0  0.0   7868  2612 ?        S    01:24   0:00
dbus-launch --autolaunch 23b48a893c0c444a91d6c360f7caac24
--binary-syntax --close-stderr
root     26193  0.0  0.0   7120  2476 ?        Ss   01:24   0:00
/usr/bin/dbus-daemon --syslog-only --fork --print-pid 5
--print-address 7 --session
root     26194  0.1  0.0      0     0 ?        I    01:24   0:00
[kworker/u16:3-btrfs-endio-write]
root     26284  0.1  0.0      0     0 ?        I    01:24   0:00
[kworker/u16:4-btrfs-endio-write]
root     26339  0.1  0.0      0     0 ?        I    01:24   0:00
[kworker/u16:5-btrfs-endio-write]
root     26340  0.1  0.0      0     0 ?        I    01:24   0:00
[kworker/u16:6-events_unbound]
root     26341  0.0  0.0      0     0 ?        I    01:24   0:00
[kworker/u16:7-btrfs-worker]
root     26342  0.0  0.0      0     0 ?        I    01:24   0:00
[kworker/u16:8-btrfs-endio-write]
root     26345  4.0  0.7 229992 121028 pts/0   S+   01:24   0:17 zypper dup
root     26362  0.0  0.0 154976  2880 ?        Ss   01:24   0:00
gpg-agent --homedir /var/tmp/zypp.6emrrc/zypp-trusted-kr7Y41Kp
--use-standard-socket --daemon
root     26379  0.0  0.0      0     0 ?        I    01:24   0:00
[kworker/u16:9-flush-btrfs-1]
root     26380  0.0  0.0      0     0 ?        I    01:24   0:00
[kworker/u16:10-btrfs-endio-meta]
root     26395  0.0  0.0  13904  8112 pts/0    S    01:25   0:00
/usr/bin/systemd-inhibit --what=sleep:shutdown:idle --who=zypp
--mode=block --why=Zypp commit running. /usr/bin/cat
root     26396  0.0  0.0   7056  3628 pts/0    S+   01:25   0:00
/bin/bash /usr/lib/zypp/plugins/commit/btrfs-defrag-plugin.sh
root     26402  0.0  0.0   5380   832 pts/0    S    01:25   0:00 /usr/bin/cat
root     26403  0.0  0.0  19840 13660 pts/0    S+   01:25   0:00
/usr/bin/python3 /usr/lib/zypp/plugins/commit/snapper.py
root     26405  0.0  0.0  86784  8248 ?        Sl   01:25   0:00
/usr/sbin/snapperd
root     28058  0.0  0.0      0     0 ?        I    01:26   0:00
[kworker/4:3-events]
root     28079  0.0  0.0      0     0 ?        I    01:26   0:00
[kworker/6:3-xfs-cil/sdb2]
root     28103  0.0  0.0      0     0 ?        I    01:26   0:00
[kworker/1:2-events]
root     28107  0.0  0.0      0     0 ?        I    01:26   0:00
[kworker/u16:11-btrfs-endio-meta]
root     28110  0.1  0.0      0     0 ?        I    01:26   0:00
[kworker/u16:12-events_unbound]
root     28111  0.0  0.0      0     0 ?        I    01:26   0:00
[kworker/u16:13-btrfs-endio-meta]
root     28551  0.0  0.0      0     0 ?        I    01:26   0:00
[kworker/0:0-events]
root     28552  0.0  0.0      0     0 ?        I    01:26   0:00
[kworker/0:2-events]
root     28581  0.0  0.0      0     0 ?        I    01:27   0:00
[kworker/3:1-events]
root     28582  0.0  0.0      0     0 ?        I    01:27   0:00
[kworker/3:3-events]
root     28615  0.0  0.0      0     0 ?        I    01:27   0:00
[kworker/0:4-events]
root     28616  0.0  0.0      0     0 ?        I    01:27   0:00
[kworker/0:5-events]
root     28694  0.0  0.0      0     0 ?        I    01:27   0:00
[kworker/5:1-events]
root     28695  0.1  0.0      0     0 ?        I    01:27   0:00
[kworker/5:3-mm_percpu_wq]
root     28696  0.0  0.0      0     0 ?        I    01:27   0:00
[kworker/5:4-events]
root     28697  0.0  0.0      0     0 ?        I    01:27   0:00
[kworker/5:5-events]
root     29191  3.7  0.1  22576 19828 pts/0    S+   01:27   0:09 rpm
--root / --dbpath /var/lib/rpm -i --percent --noglob --force --nodeps
-- /var/cache/zypp/packages/repo-oss/x86_64/kernel-default-5.0.10-1.2.x
root     29201  0.0  0.0      0     0 ?        I    01:27   0:00
[kworker/u16:14-btrfs-worker]
root     29202  0.1  0.0      0     0 ?        I    01:27   0:00
[kworker/u16:15-btrfs-endio-write]
root     29207  0.0  0.0   3920  3060 pts/0    S+   01:27   0:00
/bin/sh /var/tmp/rpm-tmp.IzxNLa 4

Here is the output of dmesg:

[13907.475336] BTRFS info (device sda1): disk space caching is enabled
[13907.475339] BTRFS info (device sda1): has skinny extents
[13908.156859] BUG: unable to handle kernel NULL pointer dereference
at 0000000000000068
[13908.156867] #PF error: [normal kernel read fault]
[13908.156870] PGD 0 P4D 0
[13908.156876] Oops: 0000 [#1] SMP NOPTI
[13908.156882] CPU: 6 PID: 17058 Comm: mount Not tainted
5.0.2-1-default #1 openSUSE Tumbleweed (unreleased)
[13908.156887] Hardware name: To Be Filled By O.E.M. To Be Filled By
O.E.M./980DE3/U3S3, BIOS P2.00 09/04/2015
[13908.156950] RIP: 0010:btrfs_qgroup_trace_subtree_swap+0xb2/0x380 [btrfs]
[13908.156955] Code: 65 ba 19 00 00 00 4c 89 fe e8 ea 14 fb ff 48 3b
04 24 0f 82 70 02 00 00 48 8b 44 24 08 4c 89 f6 31 c9 ba 11 00 00 00
48 89 df <48> 8b 40 68 48 89 44 24 08 e8 c0 14 fb ff 31 c9 4c 89 f6 ba
19 00
[13908.156962] RSP: 0018:ffffa98e8ab17810 EFLAGS: 00010246
[13908.156966] RAX: 0000000000000000 RBX: ffff9baaf53cd348 RCX: 0000000000000000
[13908.156970] RDX: 0000000000000011 RSI: 0000000000000065 RDI: ffff9baaf53cd348
[13908.156974] RBP: ffff9bab8f88ae38 R08: ffffa98e8ab177c8 R09: ffffa98e8ab177d0
[13908.156978] R10: 0000000000000000 R11: 0000000000000000 R12: ffff9baa9b67c000
[13908.156982] R13: 0000000000000000 R14: 0000000000000065 R15: 0000000000000065
[13908.156987] FS:  00007f3b012cd080(0000) GS:ffff9baba6b80000(0000)
knlGS:0000000000000000
[13908.156991] CS:  0010 DS: 0000 ES: 0000 CR0: 0000000080050033
[13908.156995] CR2: 0000000000000068 CR3: 0000000421338000 CR4: 00000000000406e0
[13908.156999] Call Trace:
[13908.157053]  ? memcmp_node_keys+0x46/0x50 [btrfs]
[13908.157102]  replace_path.isra.42+0x5f5/0x790 [btrfs]
[13908.157153]  merge_reloc_root+0x262/0x500 [btrfs]
[13908.157203]  merge_reloc_roots+0x120/0x1a0 [btrfs]
[13908.157252]  btrfs_recover_relocation+0x3f0/0x440 [btrfs]
[13908.157297]  open_ctree+0x1923/0x1c00 [btrfs]
[13908.157336]  btrfs_mount_root+0x4d2/0x620 [btrfs]
[13908.157345]  ? pcpu_chunk_refresh_hint+0x74/0xd0
[13908.157351]  ? cpumask_next+0x16/0x20
[13908.157362]  ? pcpu_alloc+0x1a7/0x610
[13908.157372]  mount_fs+0x3f/0x14d
[13908.157383]  vfs_kern_mount.part.37+0x54/0x110
[13908.157425]  btrfs_mount+0x14f/0x820 [btrfs]
[13908.157436]  ? pcpu_block_update_hint_alloc+0x13f/0x1d0
[13908.157446]  ? pcpu_cnt_pop_pages+0x40/0x50
[13908.157456]  ? pcpu_alloc_area+0xe4/0x130
[13908.157465]  ? pcpu_next_unpop+0x37/0x50
[13908.157474]  ? cpumask_next+0x16/0x20
[13908.157483]  ? pcpu_alloc+0x1a7/0x610
[13908.157492]  ? mount_fs+0x3f/0x14d
[13908.157500]  mount_fs+0x3f/0x14d
[13908.157509]  vfs_kern_mount.part.37+0x54/0x110
[13908.157519]  do_mount+0x1ec/0xc80
[13908.157529]  ? memdup_user+0x3e/0x70
[13908.157538]  ksys_mount+0xb6/0xd0
[13908.157548]  __x64_sys_mount+0x21/0x30
[13908.157558]  do_syscall_64+0x60/0x110
[13908.157567]  entry_SYSCALL_64_after_hwframe+0x49/0xbe
[13908.157577] RIP: 0033:0x7f3b011771ca
[13908.157585] Code: 48 8b 0d d1 ec 0b 00 f7 d8 64 89 01 48 83 c8 ff
c3 66 2e 0f 1f 84 00 00 00 00 00 0f 1f 44 00 00 49 89 ca b8 a5 00 00
00 0f 05 <48> 3d 01 f0 ff ff 73 01 c3 48 8b 0d 9e ec 0b 00 f7 d8 64 89
01 48
[13908.157596] RSP: 002b:00007ffecc5cfbb8 EFLAGS: 00000246 ORIG_RAX:
00000000000000a5
[13908.157605] RAX: ffffffffffffffda RBX: 000055ee96dfa640 RCX: 00007f3b011771ca
[13908.157613] RDX: 000055ee96dfa9b0 RSI: 000055ee96dfa9d0 RDI: 000055ee96dfaa80
[13908.157621] RBP: 00007f3b0129f1c4 R08: 0000000000000000 R09: 00007f3b011b8400
[13908.157630] R10: 0000000000000000 R11: 0000000000000246 R12: 0000000000000000
[13908.157638] R13: 0000000000000000 R14: 000055ee96dfaa80 R15: 000055ee96dfa9b0
[13908.157646] Modules linked in: nls_utf8 isofs fuse xt_tcpudp
ip6t_rpfilter ip6t_REJECT nf_reject_ipv6 ipt_REJECT nf_reject_ipv4
xt_conntrack ebtable_nat ip6table_nat nf_nat_ipv6 ip6table_mangle
ip6table_raw ip6table_security iptable_nat nf_nat_ipv4 nf_nat
iptable_mangle iptable_raw iptable_security nf_conntrack
nf_defrag_ipv6 nf_defrag_ipv4 ip_set nfnetlink scsi_transport_iscsi
ebtable_filter ebtables ip6table_filter ip6_tables iptable_filter
ip_tables x_tables bpfilter af_packet twofish_generic
twofish_avx_x86_64 twofish_x86_64_3way twofish_x86_64 twofish_common
serpent_avx_x86_64 serpent_sse2_x86_64 serpent_generic
blowfish_generic blowfish_x86_64 blowfish_common cast5_avx_x86_64
cast5_generic cast_common des_generic algif_skcipher camellia_generic
camellia_aesni_avx_x86_64 camellia_x86_64 xcbc sha512_ssse3
sha512_generic md4 algif_hash af_alg xfrm_user xfrm4_tunnel tunnel4
ipcomp xfrm_ipcomp esp4 ah4 af_key xfrm_algo msr w83627ehf hwmon_vid
xfs edac_mce_amd kvm_amd ccp kvm irqbypass
[13908.157692]  snd_hda_codec_hdmi crct10dif_pclmul snd_usb_audio
snd_hda_intel crc32_pclmul ghash_clmulni_intel uvcvideo snd_hda_codec
videobuf2_vmalloc videobuf2_memops videobuf2_v4l2 snd_usbmidi_lib
videodev snd_hda_core aesni_intel snd_ctxfi snd_rawmidi snd_seq_device
snd_hwdep videobuf2_common snd_pcm aes_x86_64 crypto_simd r8169
snd_timer cryptd realtek snd sp5100_tco libphy glue_helper wmi_bmof
soundcore k10temp pcspkr pcc_cpufreq button acpi_cpufreq i2c_piix4
fam15h_power hid_generic usbhid btrfs libcrc32c xor raid6_pq amdgpu
ohci_pci sr_mod cdrom crc32c_intel chash amd_iommu_v2 gpu_sched
i2c_algo_bit serio_raw xhci_pci ttm xhci_hcd ata_generic
drm_kms_helper ohci_hcd ehci_pci ehci_hcd syscopyarea sysfillrect
sysimgblt fb_sys_fops pata_atiixp usbcore drm wmi l2tp_ppp
l2tp_netlink l2tp_core ip6_udp_tunnel udp_tunnel pppox ppp_generic
slhc sg dm_multipath dm_mod scsi_dh_rdac scsi_dh_emc scsi_dh_alua
[13908.157819] CR2: 0000000000000068
[13908.157827] ---[ end trace 9ae2dc13b862adbc ]---
[13908.157881] RIP: 0010:btrfs_qgroup_trace_subtree_swap+0xb2/0x380 [btrfs]
[13908.157890] Code: 65 ba 19 00 00 00 4c 89 fe e8 ea 14 fb ff 48 3b
04 24 0f 82 70 02 00 00 48 8b 44 24 08 4c 89 f6 31 c9 ba 11 00 00 00
48 89 df <48> 8b 40 68 48 89 44 24 08 e8 c0 14 fb ff 31 c9 4c 89 f6 ba
19 00
[13908.157901] RSP: 0018:ffffa98e8ab17810 EFLAGS: 00010246
[13908.157910] RAX: 0000000000000000 RBX: ffff9baaf53cd348 RCX: 0000000000000000
[13908.157918] RDX: 0000000000000011 RSI: 0000000000000065 RDI: ffff9baaf53cd348
[13908.157926] RBP: ffff9bab8f88ae38 R08: ffffa98e8ab177c8 R09: ffffa98e8ab177d0
[13908.157934] R10: 0000000000000000 R11: 0000000000000000 R12: ffff9baa9b67c000
[13908.157942] R13: 0000000000000000 R14: 0000000000000065 R15: 0000000000000065
[13908.157951] FS:  00007f3b012cd080(0000) GS:ffff9baba6b80000(0000)
knlGS:0000000000000000
[13908.157960] CS:  0010 DS: 0000 ES: 0000 CR0: 0000000080050033
[13908.157968] CR2: 0000000000000068 CR3: 0000000421338000 CR4: 00000000000406e0

System:
Operating System: openSUSE Tumbleweed 20190502
KDE Plasma Version: 5.15.4
KDE Frameworks Version: 5.57.0
Qt Version: 5.12.3
Kernel Version: 5.0.2-1-default
OS Type: 64-bit
Processors: 8 × AMD FX-8320E Eight-Core Processor
Memory: 15,6 GiB

Thanks,
                Juan

-- 
USA LINUX OPENSUSE QUE ES SOFTWARE LIBRE, NO NECESITAS PIRATEAR NADA Y
NI TE VAS A PREOCUPAR MAS POR LOS VIRUS Y SPYWARES:
http://www.opensuse.org/es/
Puedes visitar mi blog en:
http://jerbes.blogspot.com.ar/
-- 
To unsubscribe, e-mail: opensuse-factory+unsubscribe@opensuse.org
To contact the owner, e-mail: opensuse-factory+owner@opensuse.org

[opensuse-factory] Zypper dup hangs during the kernel upgrade in Tumbleweed

Juan Erbes