Re: [opensuse-factory] zypper stuck on checking for file conflicts

15 Jul 2016

      On vendredi, 15 juillet 2016 16.48:11 h CEST Lindsay Mathieson wrote:
...
On 15 July 2016 at 16:44, Knurpht - Gertjan Lettink
 wrote:
...
Seeing this as well, wait longer.
Yup, I did, took 15min+ got got there. Thanks.
...
Do you have the kernel-source packages installed ?
Yes I do - was fiddling with the nvidia drivers.
Me too, but I'm impatient so I do a gdb attach to the pid of zypper 

strangely I got this backtrace (sorry don't have yet installed all debuginfo)
coredumpctl gdb 14620
           PID: 14620 (zypper)
           UID: 0 (root)
           GID: 0 (root)
        Signal: 11 (SEGV)
     Timestamp: Mon 2016-07-11 16:22:28 CEST (3 days ago)
  Command Line: zypper -v --no-refresh up --replacefiles
    Executable: /usr/bin/zypper
 Control Group: /user.slice/user-1502.slice/session-1.scope
          Unit: session-1.scope
         Slice: user-1502.slice
       Session: 1
     Owner UID: 1502 (bruno)
       Boot ID: a6f7e8b4ec1e4c94ad83586985e41353
    Machine ID: 5796a69412fbda1c055a261856a26e81
      Hostname: qt-kt.labaroche.ioda.net
      Coredump: /var/lib/systemd/coredump/core.zypper.
0.a6f7e8b4ec1e4c94ad83586985e41353.14620.1468246948000000.xz
       Message: Process 14620 (zypper) of user 0 dumped core.

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Reading symbols from /usr/bin/zypper...Reading symbols from /usr/lib/debug/
usr/bin/zypper.debug...done.
done.
[New LWP 14620]
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
Core was generated by `zypper -v --no-refresh up --replacefiles'.
Program terminated with signal SIGSEGV, Segmentation fault.
#0  0x000000000044cb3a in Out::ProgressBar::~ProgressBar (this=0x1cdc6f0, 
__in_chrg=<optimized out>) at /usr/src/debug/zypper-1.13.2/src/output/Out.h:
835
835     /usr/src/debug/zypper-1.13.2/src/output/Out.h: No such file or 
directory.
Missing separate debuginfos, use: zypper install libacl1-
debuginfo-2.2.52-8.6.x86_64 libattr1-debuginfo-2.4.47-7.99.x86_64 libaugeas0-
debuginfo-1.5.0-1.2.x86_64 libcurl4-debuginfo-7.49.1-1.1.x86_64 libelf1-
debuginfo-0.164-3.67.x86_64 libicu57_1-debuginfo-57.1-1.3.x86_64 libidn11-
debuginfo-1.32-1.5.x86_64 liblua5_3-debuginfo-5.3.3-1.1.x86_64 libmodman1-
debuginfo-2.0.1-17.5.x86_64 libncurses6-debuginfo-6.0-10.1.x86_64 
libnghttp2-14-debuginfo-1.11.1-1.2.x86_64 libpopt0-debuginfo-1.16-28.91.x86_64 
libproxy1-debuginfo-0.4.13-2.2.x86_64 libpsl5-debuginfo-0.13.0-1.3.x86_64 
libreadline6-debuginfo-6.3-87.2.x86_64 libssh2-1-debuginfo-1.7.0-1.3.x86_64 
libudev1-debuginfo-228-9.1.x86_64 libzypp-debuginfo-16.0.1-1.3.x86_64 rpm-
debuginfo-4.12.0.1-13.14.x86_64
(gdb) bt
#0  0x000000000044cb3a in Out::ProgressBar::~ProgressBar (this=0x1cdc6f0, 
__in_chrg=<optimized out>) at /usr/src/debug/zypper-1.13.2/src/output/Out.h:
835
#1  0x000000000044d3b6 in boost::checked_deleteOut::ProgressBar 
(x=0x1cdc6f0) at /usr/include/boost/core/checked_delete.hpp:34
#2  boost::scoped_ptrOut::ProgressBar::~scoped_ptr (this=0x7c8518 
main::rpm_callbacks+88, __in_chrg=<optimized out>) at /usr/include/boost/
smart_ptr/scoped_ptr.hpp:88
#3  
ZmartRecipients::FindFileConflictstReportReceiver::~FindFileConflictstReportReceiver 
(this=0x7c8510 main::rpm_callbacks+80, __in_chrg=<optimized out>)
    at /usr/src/debug/zypper-1.13.2/src/callbacks/rpm.h:343
#4  RpmCallbacks::~RpmCallbacks (this=0x7c84c0 main::rpm_callbacks, 
__in_chrg=<optimized out>) at /usr/src/debug/zypper-1.13.2/src/callbacks/
rpm.h:463
#5  0x00007fa81e91f278 in __run_exit_handlers (status=8, listp=0x7fa81ec845d8 
<__exit_funcs>, run_list_atexit=run_list_atexit@entry=true) at exit.c:82
#6  0x00007fa81e91f2c5 in __GI_exit (status=<optimized out>) at exit.c:104
#7  0x000000000043e119 in signal_handler (sig=<optimized out>) at /usr/src/
debug/zypper-1.13.2/src/main.cc:46
#8  <signal handler called>
#9  0x00007fa81fb284e5 in ?? () from /usr/lib64/libzypp.so.1600
#10 0x00007fa81fb25e14 in ?? () from /usr/lib64/libzypp.so.1600
#11 0x00007fa81f8e8461 in 
zypp::target::TargetImpl::commitFindFileConflicts(zypp::ZYppCommitPolicy 
const&, zypp::ZYppCommitResult&) () from /usr/lib64/libzypp.so.1600
#12 0x00007fa81f8e1a3c in zypp::target::TargetImpl::commit(zypp::ResPool, 
zypp::ZYppCommitPolicy const&) () from /usr/lib64/libzypp.so.1600
#13 0x00007fa81fa58275 in 
zypp::zypp_detail::ZYppImpl::commit(zypp::ZYppCommitPolicy const&) () from /
usr/lib64/libzypp.so.1600
#14 0x00007fa81fa4f825 in zypp::ZYpp::commit(zypp::ZYppCommitPolicy const&) () 
from /usr/lib64/libzypp.so.1600
#15 0x000000000050c411 in solve_and_commit (zypper=...) at /usr/src/debug/
zypper-1.13.2/src/solve-commit.cc:780
#16 0x000000000046b638 in Zypper::doCommand (this=this@entry=0x1c8f8c0) at /
usr/src/debug/zypper-1.13.2/src/Zypper.cc:4789
#17 0x0000000000476f7d in Zypper::safeDoCommand (this=this@entry=0x1c8f8c0) at 
/usr/src/debug/zypper-1.13.2/src/Zypper.cc:1321
#18 0x000000000043cf25 in Zypper::main (this=this@entry=0x1c8f8c0, 
argc=argc@entry=5, argv=argv@entry=0x7fff5ec0a188) at /usr/src/debug/
zypper-1.13.2/src/Zypper.cc:377
#19 0x000000000043c279 in main (argc=5, argv=0x7fff5ec0a188) at /usr/src/
debug/zypper-1.13.2/src/main.cc:111
(gdb)

When I rerun the update (only on oss) it took time (very loong, a shower + a 
coffee, and outside break) but finally success.

-- 

Bruno Friedmann 
 Ioda-Net Sàrl www.ioda-net.ch
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