February 2020 - openSUSE Science - openSUSE Mailing Lists

Re: [opensuse-science] HPC modules for non-default gcc versions
by Egbert Eich 02 Mar '20

02 Mar '20

Christian Neyers writes: > Hi all, > > we currently have the `gnu-compilers-hpc` package that mirrors the compiler > version of the "default" gcc package, i.e. version 7 currently in 15.0 and > 15.1. The spec file actually defines different flavours, but they are not > enabled in the _multibuild. > > Are there plans to enable them at some point? Or some issues holding it back? for Leap 15 and 15.1 this is actually under way: once the updates to gnu-compilers-hpc for SLE-HPC 15 and SLE-HPC 15 SP1 have gone thru QA and are released, this should show up as a Leap maintenance update automagically. Cheers, Egbert. -- To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org

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Re: [opensuse-science] load boost module
by Egbert Eich 28 Feb '20

28 Feb '20

Yes, indeed :( Darn :(( I will see if I can find a fix quickly. Cheers, Egbert. Alin Marin Elena writes: > Hi Egbert, > > it works exactly as you say, but the openmpi3 version has no headers installed. > > Alin > > Without Questions there are no Answers! > ______________________________________________________________________ > Dr. Alin Marin ELENA > http://alin.elena.space/ > ______________________________________________________________________ > > On Fri, 28 Feb 2020 at 14:22, Egbert Eich <eich(a)suse.com> wrote: > > > > > > > > Hi Alin, > > > > this shouldn't be a problem - the directory is different: > > /usr/share/lmod/moduledeps/gnu-9/boost (serial) > > and > > /usr/share/lmod/moduledeps/gnu-9-openmpi-3/boost (openmpi3) > > > > If you do > > $ module load gnu > > you will get the serial version as > > /usr/share/lmod/moduledeps/gnu-9-openmpi-3 > > is not in the module search path. > > However, if you do > > $ module load gnu openmpi3 > > /usr/share/lmod/moduledeps/gnu-9-openmpi-3 will be prepended > > to the search path and you will get the openmpi3 variant. > > > > Doesn't this work for you? > > > > Cheers, > > Egbert. > > > > Alin Marin Elena writes: > > > Hi Egbert, > > > > > > also since you are at this, it seems modules have the same name for > > > serial and mpi, resulting in bad loading when you have mpi loaded.. > > > seen this with openmpi. > > > > > > Yours, > > > Alin > > > Without Questions there are no Answers! > > > ______________________________________________________________________ > > > Dr. Alin Marin ELENA > > > http://alin.elena.space/ > > > ______________________________________________________________________ > > > > > > On Fri, 28 Feb 2020 at 13:41, Egbert Eich <eich(a)suse.com> wrote: > > > > > > > > > > > > Hi Alin! > > > > > > > > Oops, you're right. The spec file looks wrong. > > > > Lemme fix this. > > > > > > > > Thanks a lot for the report! > > > > > > > > Cheers, > > > > Egbert. > > > > > > > > Alin Marin Elena writes: > > > > > Hi, > > > > > > > > > > I try to load boost module, hpc version with openmpi and i get the error below. > > > > > > > > > > cause is the [0-9] which wants to be escaped \[0-9\] > > > > > > > > > > module load boost > > > > > Lmod has detected the following error: > > > > > /usr/share/lmod/moduledeps/gnu-9-openmpi-3/boost/1.71.0: > > > > > (boost/1.71.0): invalid command name "0-9" > > > > > While processing the following module(s): > > > > > Module fullname Module Filename > > > > > --------------- --------------- > > > > > boost/1.71.0 /usr/share/lmod/moduledeps/gnu-9-openmpi-3/boost/1.71.0 > > > > > > > > > > > > > > > Without Questions there are no Answers! > > > > > ______________________________________________________________________ > > > > > Dr. Alin Marin ELENA > > > > > http://alin.elena.space/ > > > > > ______________________________________________________________________ > > > > > -- > > > > > To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org > > > > > To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org > > > > > > > > -- > > > > Egbert Eich (Res. & Dev.) SUSE Labs - Project Manager HPC > > > > Tel: +49 911-740 53 0 https://www.suse.com > > > > ----------------------------------------------------------------------- > > > > SUSE Software Solutions Germany GmbH, Maxfeldstrasse 5, 90409 Nuernberg > > > > Geschaeftsfuehrer: Felix Imendoerffer > > > > (HRB 36809, AG Nürnberg) > > > > -- > > > > To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org > > > > To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org > > > > > > > > -- > > Egbert Eich (Res. & Dev.) SUSE Labs - Project Manager HPC > > Tel: +49 911-740 53 0 https://www.suse.com > > ----------------------------------------------------------------------- > > SUSE Software Solutions Germany GmbH, Maxfeldstrasse 5, 90409 Nuernberg > > Geschaeftsfuehrer: Felix Imendoerffer > > (HRB 36809, AG Nürnberg) > > -- > > To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org > > To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org > > -- Egbert Eich (Res. & Dev.) SUSE Labs - Project Manager HPC Tel: +49 911-740 53 0 https://www.suse.com ----------------------------------------------------------------------- SUSE Software Solutions Germany GmbH, Maxfeldstrasse 5, 90409 Nuernberg Geschaeftsfuehrer: Felix Imendoerffer (HRB 36809, AG Nürnberg) -- To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org

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Re: [opensuse-science] load boost module
by Egbert Eich 28 Feb '20

28 Feb '20

Hi Alin, this shouldn't be a problem - the directory is different: /usr/share/lmod/moduledeps/gnu-9/boost (serial) and /usr/share/lmod/moduledeps/gnu-9-openmpi-3/boost (openmpi3) If you do $ module load gnu you will get the serial version as /usr/share/lmod/moduledeps/gnu-9-openmpi-3 is not in the module search path. However, if you do $ module load gnu openmpi3 /usr/share/lmod/moduledeps/gnu-9-openmpi-3 will be prepended to the search path and you will get the openmpi3 variant. Doesn't this work for you? Cheers, Egbert. Alin Marin Elena writes: > Hi Egbert, > > also since you are at this, it seems modules have the same name for > serial and mpi, resulting in bad loading when you have mpi loaded.. > seen this with openmpi. > > Yours, > Alin > Without Questions there are no Answers! > ______________________________________________________________________ > Dr. Alin Marin ELENA > http://alin.elena.space/ > ______________________________________________________________________ > > On Fri, 28 Feb 2020 at 13:41, Egbert Eich <eich(a)suse.com> wrote: > > > > > > Hi Alin! > > > > Oops, you're right. The spec file looks wrong. > > Lemme fix this. > > > > Thanks a lot for the report! > > > > Cheers, > > Egbert. > > > > Alin Marin Elena writes: > > > Hi, > > > > > > I try to load boost module, hpc version with openmpi and i get the error below. > > > > > > cause is the [0-9] which wants to be escaped \[0-9\] > > > > > > module load boost > > > Lmod has detected the following error: > > > /usr/share/lmod/moduledeps/gnu-9-openmpi-3/boost/1.71.0: > > > (boost/1.71.0): invalid command name "0-9" > > > While processing the following module(s): > > > Module fullname Module Filename > > > --------------- --------------- > > > boost/1.71.0 /usr/share/lmod/moduledeps/gnu-9-openmpi-3/boost/1.71.0 > > > > > > > > > Without Questions there are no Answers! > > > ______________________________________________________________________ > > > Dr. Alin Marin ELENA > > > http://alin.elena.space/ > > > ______________________________________________________________________ > > > -- > > > To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org > > > To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org > > > > -- > > Egbert Eich (Res. & Dev.) SUSE Labs - Project Manager HPC > > Tel: +49 911-740 53 0 https://www.suse.com > > ----------------------------------------------------------------------- > > SUSE Software Solutions Germany GmbH, Maxfeldstrasse 5, 90409 Nuernberg > > Geschaeftsfuehrer: Felix Imendoerffer > > (HRB 36809, AG Nürnberg) > > -- > > To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org > > To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org > > -- Egbert Eich (Res. & Dev.) SUSE Labs - Project Manager HPC Tel: +49 911-740 53 0 https://www.suse.com ----------------------------------------------------------------------- SUSE Software Solutions Germany GmbH, Maxfeldstrasse 5, 90409 Nuernberg Geschaeftsfuehrer: Felix Imendoerffer (HRB 36809, AG Nürnberg) -- To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org

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Re: [opensuse-science] load boost module
by Egbert Eich 28 Feb '20

28 Feb '20

Hi Alin! Oops, you're right. The spec file looks wrong. Lemme fix this. Thanks a lot for the report! Cheers, Egbert. Alin Marin Elena writes: > Hi, > > I try to load boost module, hpc version with openmpi and i get the error below. > > cause is the [0-9] which wants to be escaped \[0-9\] > > module load boost > Lmod has detected the following error: > /usr/share/lmod/moduledeps/gnu-9-openmpi-3/boost/1.71.0: > (boost/1.71.0): invalid command name "0-9" > While processing the following module(s): > Module fullname Module Filename > --------------- --------------- > boost/1.71.0 /usr/share/lmod/moduledeps/gnu-9-openmpi-3/boost/1.71.0 > > > Without Questions there are no Answers! > ______________________________________________________________________ > Dr. Alin Marin ELENA > http://alin.elena.space/ > ______________________________________________________________________ > -- > To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org > To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org -- Egbert Eich (Res. & Dev.) SUSE Labs - Project Manager HPC Tel: +49 911-740 53 0 https://www.suse.com ----------------------------------------------------------------------- SUSE Software Solutions Germany GmbH, Maxfeldstrasse 5, 90409 Nuernberg Geschaeftsfuehrer: Felix Imendoerffer (HRB 36809, AG Nürnberg) -- To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org

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[opensuse-science] openmpi4
by Alin Marin Elena 28 Feb '20

28 Feb '20

Hi, any plans on adding openmpi4 in science? I expect some failures from older codes using it so may be a good idea. Regards, Alin Without Questions there are no Answers! ______________________________________________________________________ Dr. Alin Marin ELENA http://alin.elena.space/ ______________________________________________________________________ -- To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org

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[opensuse-science] load boost module
by Alin Marin Elena 28 Feb '20

28 Feb '20

Hi, I try to load boost module, hpc version with openmpi and i get the error below. cause is the [0-9] which wants to be escaped \[0-9\] module load boost Lmod has detected the following error: /usr/share/lmod/moduledeps/gnu-9-openmpi-3/boost/1.71.0: (boost/1.71.0): invalid command name "0-9" While processing the following module(s): Module fullname Module Filename --------------- --------------- boost/1.71.0 /usr/share/lmod/moduledeps/gnu-9-openmpi-3/boost/1.71.0 Without Questions there are no Answers! ______________________________________________________________________ Dr. Alin Marin ELENA http://alin.elena.space/ ______________________________________________________________________ -- To unsubscribe, e-mail: opensuse-science+unsubscribe(a)opensuse.org To contact the owner, e-mail: opensuse-science+owner(a)opensuse.org

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