Hello community,
here is the log from the commit of package R-base for openSUSE:Factory checked in at 2014-11-02 16:46:28
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Comparing /work/SRC/openSUSE:Factory/R-base (Old)
and /work/SRC/openSUSE:Factory/.R-base.new (New)
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "R-base"
Changes:
--------
--- /work/SRC/openSUSE:Factory/R-base/R-base.changes 2014-07-11 06:46:58.000000000 +0200
+++ /work/SRC/openSUSE:Factory/.R-base.new/R-base.changes 2014-11-02 16:46:54.000000000 +0100
@@ -1,0 +2,208 @@
+Fri Oct 31 11:59:25 UTC 2014 - detlef.steuer@gmx.de
+
+- Upstream release 3.1.2
+- Most important
+ CHANGES IN R 3.1.2:
+
+ NEW FEATURES:
+
+ * embedFonts() now defaults to format = "ps2write" for .ps and .eps
+ files. This is available in Ghostscript 9.x (since 2010) whereas
+ the previous default, format = "pswrite", was removed in
+ Ghostscript 9.10.
+
+ * For consistency with [dpqr]norm(), [dp]lnorm(sdlog = 0) model a
+ point mass at exp(mulog) rather than return NaN (for an error).
+
+ * capabilities() now reports if ICU is compiled in for use for
+ collation (it is only actually used if a suitable locale is set
+ for collation, and never for a C locale).
+
+ * (OS X only.) Package tcltk checks when loaded if it is linked
+ against the CRAN X11-based Tcl/Tk and if so that the Tcl/Tk
+ component and the X11 libraries are installed. This allows more
+ informative error messages to be given advising the installation
+ of the missing component or of XQuartz.
+
+ The X11() device and X11-based versions of the data editor and
+ viewer (invoked by edit() and View() for data frames and matrices
+ from command-line R) check that the X11 libraries are installed
+ and if not advises installing XQuartz.
+
+ * icuSetCollate() allows locale = "default", and locale = "none" to
+ use OS services rather than ICU for collation.
+
+ Environment variable R_ICU_LOCALE can be used to set the default
+ ICU locale, in case the one derived from the OS locale is
+ inappropriate (this is currently necessary on Windows).
+
+ * New function icuGetCollate() to report on the ICU collation
+ locale in use (if any).
+
+ * utils::URLencode() was updated to use unreserved and reserved
+ characters from RFC 3986, http://tools.ietf.org/html/rfc3986>, instead of RFC 1738.
+
+ * unique(warnings()) and c(warnings()) are now supported.
+
+ * The Bioconductor 'version' used by setRepositories() now defaults
+ to 3.0. (It can be set at runtime _via_ environment variable
+ R_BIOC_VERSION.)
+
+ INSTALLATION and INCLUDED SOFTWARE:
+
+ * The configure script reports on the more important
+ capabilities/options which will not be compiled in.
+
+ More types of external BLAS are recognized by name in that
+ report.
+
+ * When building R as a shared library, the -L${R_HOME}/lib${R_ARCH}
+ flag is placed earlier in the link commands used during
+ installation and when packages are installed: this helps ensure
+ that the current build has priority if an R shared library has
+ already been installed by e.g. install-libR in a library
+ mentioned in LDFLAGS (and not in 'your system's library
+ directory' as documented). (Wish of PR#15790.)
+
+ * LaTeX package upquote is no longer required for R's use of
+ inconsolata.
+
+ * (Windows only) If both 32 and 64 bit versions of R are installed,
+ the bin/R.exe and bin/Rscript.exe executables now run 64 bit R.
+ (To run 32 bit R, overwrite these files with copies of
+ bin/i386/Rfe.exe.)
+
+ UTILITIES:
+
+ * Running R CMD check with _R_CHECK_DEPENDS_ONLY_ true now makes
+ the VignetteBuilder packages available even if they are listed in
+ Suggests, since they are needed to recognise and process
+ non-Sweave vignettes.
+
+ * R CMD check now reports empty importFrom declarations in a
+ NAMESPACE file, as these are common errors (writing
+ importFrom(Pkg) where import(Pkg) was intended).
+
+ * R CMD check now by default checks code usage directly on the
+ package namespace without loading and attaching the package and
+ its suggests and enhances. For good practice with packages in
+ the Suggests field, see SS1.1.3.1 of 'Writing R Extensions'. For
+ use of lazy-data objects in the package's own code, see ?data.
+
+ BUG FIXES:
+
+ * dmultinom() did not handle non-finite probabilities correctly.
+
+ * prettyNum(x, zero.print=*) now also works when x contains NAs.
+
+ * A longstanding bug exhibited by nlminb() on Windows was traced to
+ a compiler bug in gcc 4.6.3; a workaround has been put in place.
+ (PR#15244 and PR#15914).
+
+ * Rendering of \command in HTML versions of help pages has been
+ improved: this is particularly evident on the help page for
+ INSTALL.
+
+ * as.hexmode(x) and as.octmode(x) now behave correctly for some
+ numeric x, e.g., c(NA, 1) or c(1, pi).
+
+ * drop1() failed if the scope argument had no variables to drop.
+ (PR#15935)
+
+ * edit() (and hence fix()) failed if an object had a non-character
+ attribute named "source" (an attribute that had been used in R
+ prior to version 2.14.0).
+
+ * callGeneric() could fail if the generic had ... as a formal
+ argument. (PR#15937).
+
+ * Forking in package parallel called C entry point exit in the
+ child. This was unsafe (_exit should have been called), and
+ could flush stdin of the main R process (seen most often on
+ Solaris).
+
+ As good practice, stdout is now flushed before forking a child.
+
+ * R objects such as list(`a\b` = 1) now print correctly.
+
+ * getAnywhere("C_pbinom") now returns correctly a single object
+ (rather than unlisting it).
+
+ * The confint() method for nls() fits failed it these has specified
+ parameter limits despite using an algorithm other than "port".
+ (PR#15960)
+
+ * Subclassing an S4 class failed if the class required arguments to
+ the generator, through its initialize() method.
+
+ * removeSource() did not properly handle expressions containing
+ arguments that were supplied as missing, e.g. x[i,]. (PR#15957)
+
+ * as.environment(list()) now works, and as.list() of such an
+ environment is now the same as list().
+
+ * Several tcltk functions failed when run in unusual environments.
+ (PR#15970)
+
+ * options(list()) now works (trivially). (PR#15979)
+
+ * merge(<dendrogram>, ..) now works correctly for two `independent'
+ dendrograms (PR#15648), and still compatibly via adjust = "auto"
+ e.g. for two branches of an existing dendrogram.
+
+ * The plot method for "hclust" objects gets an optional argument
+ check; When that is true (the default) it checks more carefully
+ for valid input.
+
+ * (Windows only) If a user chose to install 64 bit R but not 32 bit
+ R, the bin/R and bin/Rscript executables failed to run.
+ (PR#15981)
+
+ * Various possible buffer overruns have been prevented, and missed
+ memory protection added. (PR#15990)
+
+ * Rscript no longer passes --args to R when there are no extra
+ ("user") arguments.
+
+ * objects like getClass("refClass")@prototype now print() and str()
+ without error.
+
+ * identical() now also looks at the S4 bit.
+
+ * hist(x, breaks) is more robust in adding a small fuzz to few
+ breaks when some are very large. (PR#15988)
+
+ * sub() and gsub() did not handle regular expressions like "\s{2,}"
+ properly if the text contained NA or non-ascii elements in a
+ UTF-8 locale. Part of this was due to a bug in the TRE library.
+ (PR#16009)
+
+ * RShowDoc("NEWS") now displays the PDF version.
+
+ * Matrices and arrays with last dimension zero did not print at all
+ or incompletely. (PR#16012)
+
+ * plot.histogram() and hence hist() now respect the xaxs, yaxs and
+ lab graphics parameters. (PR#16021)
+
+ * bw.SJ(x) and other bw.*() no longer segfault when x contains
+ non-finite values. (PR#16024)
+
+ * R CMD Rd2pdf unintentionally ignored its --os option.
+
+ * The internal method of download.file() was not reporting file
+ sizes and progress correctly on files larger than 2GB (inherited
+ from libxml2). This is corrected for 64-bit builds (32-bit
+ platforms may not support such files, but where possible will be
++++ 11 more lines (skipped)
++++ between /work/SRC/openSUSE:Factory/R-base/R-base.changes
++++ and /work/SRC/openSUSE:Factory/.R-base.new/R-base.changes
Old:
----
R-3.1.1.tar.bz2
New:
----
R-3.1.2.tar.bz2
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Other differences:
------------------
++++++ R-base.spec ++++++
--- /var/tmp/diff_new_pack.JnGW8g/_old 2014-11-02 16:46:55.000000000 +0100
+++ /var/tmp/diff_new_pack.JnGW8g/_new 2014-11-02 16:46:55.000000000 +0100
@@ -18,7 +18,7 @@
Name: R-base
%define release 1
-Version: 3.1.1
+Version: 3.1.2
Release: %release
Source: R-%{version}.tar.bz2
#Source: http://cran.r-project.org/src/base/R-2/R-%%{version}.tar.gz
@@ -84,15 +84,15 @@
Requires: xorg-x11-fonts-75dpi
Provides: R = %{version}
-Provides: R-KernSmooth = 2.23.12
-Provides: R-MASS = 7.3.33
+Provides: R-KernSmooth = 2.23.13
+Provides: R-MASS = 7.3.35
Provides: R-Matrix = 1.1.4
#Provides: R-base = %%{version} # implicitly provided
Obsoletes: R-Matrix < 1.1.4
-Provides: R-boot = 1.3.11
-Provides: R-class = 7.3.10
-Provides: R-cluster = 1.15.2
-Provides: R-codetools = 0.2.8
+Provides: R-boot = 1.3.13
+Provides: R-class = 7.3.11
+Provides: R-cluster = 1.15.3
+Provides: R-codetools = 0.2.9
Provides: R-compiler = %{version}
Provides: R-datasets = %{version}
Provides: R-foreign = 0.8.61
@@ -101,8 +101,8 @@
Provides: R-grid = %{version}
Provides: R-lattice = 0.20.29
Provides: R-methods = %{version}
-Provides: R-mgcv = 1.8.0
-Provides: R-nlme = 3.1.117
+Provides: R-mgcv = 1.8.3
+Provides: R-nlme = 3.1.118
Provides: R-nnet = 7.3.8
Provides: R-parallel = %{version}
Provides: R-rpart = 4.1.8
++++++ R-3.1.1.tar.bz2 -> R-3.1.2.tar.bz2 ++++++
/work/SRC/openSUSE:Factory/R-base/R-3.1.1.tar.bz2 /work/SRC/openSUSE:Factory/.R-base.new/R-3.1.2.tar.bz2 differ: char 11, line 1
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